RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CABLES1Q8TDN4 633 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 LRRC8CQ8TDW0 803 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 DBNDD2Q9BQY9 259 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 BLZF1Q9H2G9 400 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 ANKRD65E5RJM6 399 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 RRAGAQ7L523 313 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 C2CD5Q86YS7 1000 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 AGTPBP1Q9UPW5 1226 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 MAP3K4Q9Y6R4 1608 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 PPP1R2P41236 205 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 TXKP42681 527 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 PPP2R5EQ16537 467 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 CEP55Q53EZ4 464 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 DALRD3Q5D0E6 543 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 OSBPL1AQ9BXW6 950 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 AATFQ9NY61 560 aaKnown RBP eCLIP9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 SPHKAPQ2M3C7 1700 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 PNMA6EA0A0J9YXQ4 647 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 SUPT20HL1Q3ZLR7 823 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 DYMQ7RTS9 669 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 UHMK1Q8TAS1 419 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 NELFBQ8WX92 580 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 COQ7Q99807 217 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 MAK16Q9BXY0 300 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 HELLSQ9NRZ9 838 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 KCNJ14Q9UNX9 436 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 JAG2Q9Y219 1238 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 CFAP65Q6ZU64 1925 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 RIMBP2O15034 1052 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 TADA3O75528 432 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 PRDM1O75626 825 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 MCF2P10911 925 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 BIRC3Q13489 604 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 ZNF827Q17R98 1081 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 GRAMD1BQ3KR37 738 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 TMC4Q7Z404 712 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 CCDC13Q8IYE1 715 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 OR8K1Q8NGG5 319 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 SH3GL1Q99961 368 aa9.51□□□□□ -0.89
LIMCH1-218ENST00000513024 ZBTB22O15209 634 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 KRT14P02533 472 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 TTC38Q5R3I4 469 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 C6orf118Q5T5N4 469 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 DDX42Q86XP3 938 aaKnown RBP eCLIP9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 USP28Q96RU2 1077 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 C10orf88Q9H8K7 445 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 SERTAD1Q9UHV2 236 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 TET3O43151 1660 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 IL9RQ01113 521 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 SRGAP1Q7Z6B7 1085 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 RMI1Q9H9A7 625 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 GPBP1L1Q9HC44 474 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 ZNF229Q9UJW7 825 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 PALD1Q9ULE6 856 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 ATP11BQ9Y2G3 1177 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 AFG3L2Q9Y4W6 797 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 ANGPTL3Q9Y5C1 460 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 hCG_1642624A0A1W2PR95 340 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 GCFC2P16383 781 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 IFNAR2P48551 515 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 GABPB2Q8TAK5 448 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 KIFC3Q9BVG8 833 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 FANCLQ9NW38 375 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 TBC1D7Q9P0N9 293 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 ADAM21Q9UKJ8 722 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 CTNND1O60716 968 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 KRT4P19013 534 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 ECE1P42892 770 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 SP4Q02446 784 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 HERC4Q5GLZ8 1057 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 TMEM87BQ96K49 555 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 TBC1D23Q9NUY8 699 aa9.5□□□□□ -0.89
LIMCH1-218ENST00000513024 ZCCHC11Q5TAX3 1644 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 UFL1O94874 794 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 KRT7P08729 469 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 HARSP12081 509 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 PFKFB1P16118 471 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 LMNB1P20700 586 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 ADALQ6DHV7 355 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 CCDC84Q86UT8 332 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 NELFCDQ8IXH7 590 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 TBC1D22AQ8WUA7 517 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 CASP10Q92851 521 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 FAM210AQ96ND0 272 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 VPS37BQ9H9H4 285 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 WARS2Q9UGM6 360 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 MTMR6Q9Y217 621 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 NPATQ14207 1427 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 TMTC3Q6ZXV5 915 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 ZNF653Q96CK0 615 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 PARVBQ9HBI1 364 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 INTUQ9ULD6 942 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 NBPF26B4DH59 902 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 LDHBP07195 334 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 CYLC2Q14093 348 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 PPP2R5DQ14738 602 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 MYSM1Q5VVJ2 828 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 CCDC80Q76M96 950 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms