RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CCDC22O60826 627 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 KRT37O76014 449 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 HAUS5O94927 633 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 TNNC2P02585 160 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 PPP2R5CQ13362 524 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 TRIM63Q969Q1 353 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 ZBTB18Q99592 522 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 TTC1Q99614 292 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 SUN2Q9UH99 717 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 APOBEC2Q9Y235 224 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 IGF1RP08069 1367 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 MYO1FO00160 1098 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 SEC31AO94979 1220 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 PSMC1P62191 440 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 IQCB1Q15051 598 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 BABAM1Q9NWV8 329 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 PDP2Q9P2J9 529 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 POLR3AO14802 1390 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 KIF24Q5T7B8 1368 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 FOXP2O15409 715 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 COPB1P53618 953 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 IGBP1P78318 339 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 SF3A3Q12874 501 aaKnown RBP eCLIP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 ZNF804AQ7Z570 1209 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 BBS5Q8N3I7 341 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 PRPF38AQ8NAV1 312 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 DHTKD1Q96HY7 919 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 CNGB3Q9NQW8 809 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 ATP8A1Q9Y2Q0 1164 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 GADD45BO75293 160 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 PFKFB1P16118 471 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 SERPINB1P30740 379 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 BASP1P80723 227 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 SRLQ86TD4 932 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 POLKQ9UBT6 870 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 PYCARDQ9ULZ3 195 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 ARHGAP5Q13017 1502 aa12.16□□□□□ -0.46
LIMCH1-217ENST00000512946 WBP4O75554 376 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 CA4P22748 312 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 PSMD2Q13200 908 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 MAPRE2Q15555 327 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 FBXO38Q6PIJ6 1188 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 PIK3AP1Q6ZUJ8 805 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 TRMT10CQ7L0Y3 403 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 ANKRD27Q96NW4 1050 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 C1orf112Q9NSG2 853 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 RTEL1Q9NZ71 1219 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 TRAF3IP3Q9Y228 551 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 SCAF11Q99590 1463 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 LOC102724159A0A0B4J2E5 919 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 CCND1P24385 295 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 S100A5P33763 92 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 EHHADHQ08426 723 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 PWP2Q15269 919 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 C1orf146Q5VVC0 180 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 NEK8Q86SG6 692 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 APPBP2Q92624 585 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 PKD2L2Q9NZM6 624 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 MPP6Q9NZW5 540 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 EXOC1LA0A1B0GW35 172 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 ABCD1P33897 745 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 AGGF1Q8N302 714 aaeCLIP12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 CCPG1Q9ULG6 757 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 ZNF189O75820 626 aaPredicted RBP12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 RASSF9O75901 435 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 CPP00450 1065 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 PMS1P54277 932 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 STX3Q13277 289 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 HACE1Q8IYU2 909 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 NAF1Q96HR8 494 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 ZFP69BQ9UJL9 534 aa12.15□□□□□ -0.46
LIMCH1-217ENST00000512946 ACAD11Q709F0 780 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 RPS6KC1Q96S38 1066 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 ELAC2Q9BQ52 826 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 MRPL44Q9H9J2 332 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 ABCF3Q9NUQ8 709 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 DNAJC17Q9NVM6 304 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 PSD3Q9NYI0 1048 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 SERTAD1Q9UHV2 236 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 TMEM247A6NEH6 219 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 KPNA7A9QM74 516 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 MEFVO15553 781 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 PTCD1O75127 700 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 RAD23BP54727 409 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 ZC3H12BQ5HYM0 836 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 TMTC4Q5T4D3 741 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 PIK3R5Q8WYR1 880 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 BRIP1Q9BX63 1249 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 SLC13A4Q9UKG4 626 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 PNMA2Q9UL42 364 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 INTUQ9ULD6 942 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 NPR1P16066 1061 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 TMED2Q15363 201 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 CALCRLQ16602 461 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 BZW1Q7L1Q6 419 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 MYCT1Q8N699 235 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 DHX38Q92620 1227 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 HIC2Q96JB3 615 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 FAM210AQ96ND0 272 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 PLIN2Q99541 437 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms