RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 IGKV6D-41A0A0C4DH26 115 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 POTEB3A0JP26 581 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 KPNA6O60684 536 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 IFIT2P09913 472 aaKnown RBP13.81□□□□□ -0.2
RNF4-216ENST00000511859 BMP3P12645 472 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 KCNA5P22460 613 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 PTGS1P23219 599 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 STAT2P52630 851 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 PTPN11Q06124 597 aaPredicted RBP13.81□□□□□ -0.2
RNF4-216ENST00000511859 SLFNL1Q499Z3 407 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 BRDTQ58F21 947 aaPredicted RBP13.81□□□□□ -0.2
RNF4-216ENST00000511859 CEP85Q6P2H3 762 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 POTEBQ6S5H4 581 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 FBXO16Q8IX29 292 aaPredicted RBP13.81□□□□□ -0.2
RNF4-216ENST00000511859 ZNF444Q8N0Y2 327 aaPredicted RBP13.81□□□□□ -0.2
RNF4-216ENST00000511859 ZNF287Q9HBT7 754 aa13.81□□□□□ -0.2
RNF4-216ENST00000511859 ZNF536O15090 1300 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 MYH7P12883 1935 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 GRXCR2A6NFK2 248 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 TMEM232C9JQI7 657 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 DCXO43602 365 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 TTLL1O95922 423 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 MYL3P08590 195 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 ERVK-21P61565 698 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 NBPF20Q3BBV1 942 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 FAM47CQ5HY64 1035 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 TMEM63BQ5T3F8 832 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 PTCRAQ6ISU1 281 aaPredicted RBP13.8□□□□□ -0.2
RNF4-216ENST00000511859 ZSCAN25Q6NSZ9 544 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 GIMAP6Q6P9H5 292 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 FAM160B2Q86V87 743 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 GDPD5Q8WTR4 605 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 TGS1Q96RS0 853 aaKnown RBP13.8□□□□□ -0.2
RNF4-216ENST00000511859 RAD9AQ99638 391 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 WDR11Q9BZH6 1224 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 MTMR4Q9NYA4 1195 aa13.8□□□□□ -0.2
RNF4-216ENST00000511859 PTPRSQ13332 1948 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 LOC102724159A0A0B4J2E5 919 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 LCHNA4D1U4 455 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 PLA2G6O60733 806 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 PARNO95453 639 aaKnown RBP13.79□□□□□ -0.2
RNF4-216ENST00000511859 IL9P15248 144 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 PWP2Q15269 919 aaKnown RBP13.79□□□□□ -0.2
RNF4-216ENST00000511859 SLFN13Q68D06 897 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 SPRED2Q7Z698 418 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 FTSJ3Q8IY81 847 aaKnown RBP13.79□□□□□ -0.2
RNF4-216ENST00000511859 KIF1BPQ96EK5 621 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 BOLA2Q9H3K6 86 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 CYP39A1Q9NYL5 469 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 ADD3Q9UEY8 706 aaKnown RBP13.79□□□□□ -0.2
RNF4-216ENST00000511859 CTNNA3Q9UI47 895 aa13.79□□□□□ -0.2
RNF4-216ENST00000511859 COL4A4P53420 1690 aaPredicted RBP13.78□□□□□ -0.2
RNF4-216ENST00000511859 TANC1Q9C0D5 1861 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 CFAP54Q96N23 3096 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 RBM47A0AV96 593 aaKnown RBP13.78□□□□□ -0.2
RNF4-216ENST00000511859 GJB5O95377 273 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 ALAS1P13196 640 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 WDR5P61964 334 aaKnown RBP13.78□□□□□ -0.2
RNF4-216ENST00000511859 ITPRIPQ8IWB1 547 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 CCDC155Q8N6L0 562 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 CAGE1Q8TC20 777 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 AFAP1L1Q8TED9 768 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 STAG1Q8WVM7 1258 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 CEP95Q96GE4 821 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 MFSD14AQ96MC6 490 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 PUS7LQ9H0K6 701 aaKnown RBP13.78□□□□□ -0.2
RNF4-216ENST00000511859 PRKAG3Q9UGI9 489 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 NOD1Q9Y239 953 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 FAM50BQ9Y247 325 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 SIP14410 1827 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 C5orf42Q9H799 3197 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 RAD50Q92878 1312 aa13.78□□□□□ -0.2
RNF4-216ENST00000511859 MINDY4BA8MYZ0 360 aa13.77□□□□□ -0.21
RNF4-216ENST00000511859 NKRFO15226 690 aaKnown RBP eCLIP13.77□□□□□ -0.21
RNF4-216ENST00000511859 EFCAB14O75071 495 aa13.77□□□□□ -0.21
RNF4-216ENST00000511859 ATP5JP18859 108 aa13.77□□□□□ -0.21
RNF4-216ENST00000511859 STK11IPQ8N1F8 1099 aa13.77□□□□□ -0.21
RNF4-216ENST00000511859 OR6J1Q8NGC5 347 aa13.77□□□□□ -0.21
RNF4-216ENST00000511859 NEK9Q8TD19 979 aa13.77□□□□□ -0.21
RNF4-216ENST00000511859 HAUS7Q99871 368 aa13.77□□□□□ -0.21
RNF4-216ENST00000511859 UPF3BQ9BZI7 483 aaKnown RBP13.77□□□□□ -0.21
RNF4-216ENST00000511859 DDX49Q9Y6V7 483 aaKnown RBP13.77□□□□□ -0.21
RNF4-216ENST00000511859 ZDBF2Q9HCK1 2354 aa13.77□□□□□ -0.21
RNF4-216ENST00000511859 MYO7AQ13402 2215 aa13.77□□□□□ -0.21
RNF4-216ENST00000511859 ABHD14A-ACY1A0A1B0GW23 586 aa13.76□□□□□ -0.21
RNF4-216ENST00000511859 LINC01553A4QN01 128 aa13.76□□□□□ -0.21
RNF4-216ENST00000511859 GSG1L2A8MUP6 293 aa13.76□□□□□ -0.21
RNF4-216ENST00000511859 SLC1A4P43007 532 aa13.76□□□□□ -0.21
RNF4-216ENST00000511859 CACNB1Q02641 598 aaPredicted RBP13.76□□□□□ -0.21
RNF4-216ENST00000511859 IKQ13123 557 aaPredicted RBP13.76□□□□□ -0.21
RNF4-216ENST00000511859 CNKSR3Q6P9H4 555 aa13.76□□□□□ -0.21
RNF4-216ENST00000511859 LRRC47Q8N1G4 583 aaKnown RBP13.76□□□□□ -0.21
RNF4-216ENST00000511859 GMCL1Q96IK5 515 aa13.76□□□□□ -0.21
RNF4-216ENST00000511859 STRBPQ96SI9 672 aaKnown RBP13.76□□□□□ -0.21
RNF4-216ENST00000511859 MTUS1Q9ULD2 1270 aa13.76□□□□□ -0.21
RNF4-216ENST00000511859 PTPRZ1P23471 2315 aaPredicted RBP13.76□□□□□ -0.21
RNF4-216ENST00000511859 A6NJR5 290 aa13.75□□□□□ -0.21
RNF4-216ENST00000511859 MUM1L1Q5H9M0 696 aa13.75□□□□□ -0.21
RNF4-216ENST00000511859 NSMFQ6X4W1 530 aa13.75□□□□□ -0.21
RNF4-216ENST00000511859 CRBNQ96SW2 442 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms