RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 COL11A1P12107 1806 aaPredicted RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 TNPO2O14787 897 aaKnown RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 CPLX1O14810 134 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 CYTH3O43739 400 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 LARGE1O95461 756 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 SMARCA1P28370 1054 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 STAT3P40763 770 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 SLC4A3P48751 1232 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 OAZ1P54368 228 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 ME3Q16798 604 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 SLC35G1Q2M3R5 365 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 SNRNP48Q6IEG0 339 aaKnown RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 CPLX2Q6PUV4 134 aaKnown RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 HOMER1Q86YM7 354 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 CCAR1Q8IX12 1150 aaKnown RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 RRP36Q96EU6 259 aaKnown RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 ZSCAN31Q96LW9 406 aaPredicted RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 PIGSQ96S52 555 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 TEX13BQ9BXU2 312 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 SPATC1LQ9H0A9 340 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 RIOX1Q9H6W3 641 aa11.61□□□□□ -0.55
NUP54-203ENST00000504173 RAVER2Q9HCJ3 691 aaKnown RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 HMX1Q9NP08 348 aaPredicted RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 ZNF214Q9UL59 606 aaPredicted RBP11.61□□□□□ -0.55
NUP54-203ENST00000504173 CNTNAP5Q8WYK1 1306 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 ATP2A1O14983 1001 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 ZBTB5O15062 677 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 CD2BP2O95400 341 aaKnown RBP11.6□□□□□ -0.55
NUP54-203ENST00000504173 SCRN1Q12765 414 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 SHHQ15465 462 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 QRICH1Q2TAL8 776 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 Q3C1V9 767 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 WDR78Q5VTH9 848 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 NCAPG2Q86XI2 1143 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 NECAB1Q8N987 351 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 GTF3C6Q969F1 213 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 MOV10L1Q9BXT6 1211 aaKnown RBP11.6□□□□□ -0.55
NUP54-203ENST00000504173 CWC22Q9HCG8 908 aaKnown RBP11.6□□□□□ -0.55
NUP54-203ENST00000504173 SH2B1Q9NRF2 756 aaPredicted RBP11.6□□□□□ -0.55
NUP54-203ENST00000504173 SEC63Q9UGP8 760 aaKnown RBP11.6□□□□□ -0.55
NUP54-203ENST00000504173 PNMA2Q9UL42 364 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 CCPG1Q9ULG6 757 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 ZNF536O15090 1300 aa11.6□□□□□ -0.55
NUP54-203ENST00000504173 BAZ2BQ9UIF8 2168 aaKnown RBP11.6□□□□□ -0.55
NUP54-203ENST00000504173 CDKL5O76039 1030 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 SLC25A27O95847 323 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 ICAM1P05362 532 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 ALAS1P13196 640 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 COPB2P35606 906 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 MRE11P49959 708 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 AKAP17AQ02040 695 aaKnown RBP11.59□□□□□ -0.55
NUP54-203ENST00000504173 CACNB1Q02641 598 aaPredicted RBP11.59□□□□□ -0.55
NUP54-203ENST00000504173 FUT2Q10981 343 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 USH1GQ495M9 461 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 TMEM31Q5JXX7 168 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 FBXO11Q86XK2 927 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 RIOX2Q8IUF8 465 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 MTMR8Q96EF0 704 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 AGBL1Q96MI9 1066 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 PORCNQ9H237 461 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 HOMER2Q9NSB8 354 aa11.59□□□□□ -0.55
NUP54-203ENST00000504173 PNMA6FA0A0J9YX94 578 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 hCG_1642624A0A1W2PR95 340 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 IFNAR1P17181 557 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 TAL1P17542 331 aaPredicted RBP11.58□□□□□ -0.56
NUP54-203ENST00000504173 ERCC3P19447 782 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 MAPK4P31152 587 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 GRIN2CQ14957 1233 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 NTRK3Q16288 839 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 TKFCQ3LXA3 575 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 C9orf50Q5SZB4 431 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 MAP3K21Q5TCX8 1036 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 CCDC83Q8IWF9 413 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 TRIM22Q8IYM9 498 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 SHCBP1Q8NEM2 672 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 PHKBQ93100 1093 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 COA7Q96BR5 231 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 TMX3Q96JJ7 454 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 AMNQ9BXJ7 453 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 SLC26A6Q9BXS9 759 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 MROH8Q9H579 483 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 RNF146Q9NTX7 359 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 RIPK3Q9Y572 518 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 V9GY48 417 aaPredicted RBP11.58□□□□□ -0.56
NUP54-203ENST00000504173 MYH6P13533 1939 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 LTBP2Q14767 1821 aa11.58□□□□□ -0.56
NUP54-203ENST00000504173 PRPF3O43395 683 aaKnown RBP11.57□□□□□ -0.56
NUP54-203ENST00000504173 GPR37L1O60883 481 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 PPP1R11O60927 126 aaPredicted RBP11.57□□□□□ -0.56
NUP54-203ENST00000504173 PPFIA3O75145 1194 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 SSRP1Q08945 709 aaKnown RBP11.57□□□□□ -0.56
NUP54-203ENST00000504173 ST3GAL1Q11201 340 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 TRAF1Q13077 416 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 PLEKHH3Q7Z736 793 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 HSCBQ8IWL3 235 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 CHST13Q8NET6 341 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 TRERF1Q96PN7 1200 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 RNF26Q9BY78 433 aaPredicted RBP11.57□□□□□ -0.56
NUP54-203ENST00000504173 FBXO40Q9UH90 709 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 IVNS1ABPQ9Y6Y0 642 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms