RNA–Protein interactions for RNA: ENST00000497993.5

TMEM39A-212, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 590 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-212ENST00000497993 XAGE3Q8WTP9 111 aa7.27□□□□□ -1.25
TMEM39A-212ENST00000497993 NUDT8Q8WV74 236 aa7.27□□□□□ -1.25
TMEM39A-212ENST00000497993 PLD4Q96BZ4 506 aa7.27□□□□□ -1.25
TMEM39A-212ENST00000497993 CRAMP1Q96RY5 1269 aa7.27□□□□□ -1.25
TMEM39A-212ENST00000497993 SMG9Q9H0W8 520 aaKnown RBP7.27□□□□□ -1.25
TMEM39A-212ENST00000497993 BSDC1Q9NW68 430 aaPredicted RBP7.27□□□□□ -1.25
TMEM39A-212ENST00000497993 POLR2AP24928 1970 aaKnown RBP7.27□□□□□ -1.25
TMEM39A-212ENST00000497993 ARAP2Q8WZ64 1704 aa7.27□□□□□ -1.25
TMEM39A-212ENST00000497993 CNTNAP5Q8WYK1 1306 aa7.27□□□□□ -1.25
TMEM39A-212ENST00000497993 COL4A5P29400 1685 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 RTL9Q8NET4 1388 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 EREGO14944 169 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 MAFGO15525 162 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 PDPK1O15530 556 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 VAMP4O75379 141 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 EIF2S2P20042 333 aaKnown RBP7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 LMNB1P20700 586 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 PAX3P23760 479 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 CNGA1P29973 690 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 ALDH1B1P30837 517 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 GBP2P32456 591 aaPredicted RBP7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 IRS1P35568 1242 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 PRELPP51888 382 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 ZFYVE27Q5T4F4 411 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 ZNF296Q8WUU4 475 aaPredicted RBP7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 TMEM74Q96NL1 305 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 SRRTQ9BXP5 876 aaKnown RBP7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 BCO2Q9BYV7 579 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 PPP4R2Q9NY27 417 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 KANSL3Q9P2N6 904 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 PLAAQ9Y263 795 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 MYH13Q9UKX3 1938 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 ZNF609O15014 1411 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 SH3TC1Q8TE82 1336 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 CDHR2Q9BYE9 1310 aa7.26□□□□□ -1.25
TMEM39A-212ENST00000497993 CEP350Q5VT06 3117 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 SPDYE3A6NKU9 549 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 SMNDC1O75940 238 aaKnown RBP eCLIP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 ANXA1P04083 346 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 KRT18P05783 430 aaKnown RBP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 AFF1P51825 1210 aaKnown RBP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 EPHB1P54762 984 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 SF3B3Q15393 1217 aaKnown RBP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 DDR2Q16832 855 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 TWISTNBQ3B726 338 aaPredicted RBP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 C2orf27AQ580R0 203 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 PCNX4Q63HM2 1172 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 NXPE4Q6UWF7 544 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 WDR75Q8IWA0 830 aaKnown RBP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 CCDC191Q8NCU4 936 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 EVI5LQ96CN4 794 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 EAF1Q96JC9 268 aaPredicted RBP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 UTP14AQ9BVJ6 771 aaKnown RBP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 PBX4Q9BYU1 374 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 MAF1Q9H063 256 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 VPS33BQ9H267 617 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 NOP53Q9NZM5 478 aaKnown RBP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 ATP8A1Q9Y2Q0 1164 aa7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 SUPT16HQ9Y5B9 1047 aaKnown RBP7.25□□□□□ -1.25
TMEM39A-212ENST00000497993 LAMB1P07942 1786 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 MINDY4BA8MYZ0 360 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 ALG1L2C9J202 215 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 SMAD7O15105 426 aaKnown RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 GADD45BO75293 160 aaPredicted RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 PCCAP05165 728 aaPredicted RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 NID1P14543 1247 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 PMLP29590 882 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 GNALP38405 381 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 SQSTM1Q13501 440 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 COL9A3Q14050 684 aaPredicted RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 HLTFQ14527 1009 aaKnown RBP eCLIP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 CCDC85BQ15834 202 aaPredicted RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 GRIK5Q16478 980 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 MAP9Q49MG5 647 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 CCDC93Q567U6 631 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 C8orf86Q6ZUL3 223 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 ALYREFQ86V81 257 aaKnown RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 GALNT12Q8IXK2 581 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 THAP3Q8WTV1 239 aaPredicted RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 TSR2Q969E8 191 aaKnown RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 APBA2Q99767 749 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 METTL22Q9BUU2 404 aaPredicted RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 RTFDC1Q9BY42 306 aaPredicted RBP7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 TAOK3Q9H2K8 898 aa7.24□□□□□ -1.25
TMEM39A-212ENST00000497993 DDX58O95786 925 aaKnown RBP7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 CT47B1P0C2W7 299 aaPredicted RBP7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 GPTP24298 496 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 RASSF7Q02833 373 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 SLFN5Q08AF3 891 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 TKFCQ3LXA3 575 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 BRDTQ58F21 947 aaPredicted RBP7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 KSR2Q6VAB6 950 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 ARHGAP27Q6ZUM4 889 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 RTKN2Q8IZC4 609 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 ZBTB38Q8NAP3 1195 aaPredicted RBP7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 PLA2G12BQ9BX93 195 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 PHAXQ9H814 394 aaKnown RBP7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 KCNQ5Q9NR82 932 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 DZANK1Q9NVP4 752 aa7.23□□□□□ -1.25
TMEM39A-212ENST00000497993 LEMD3Q9Y2U8 911 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms