RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 ZFYVE27Q5T4F4 411 aa6.93□□□□□ -1.3
SMC4-227ENST00000497984 EEF1DP3Q658K8 133 aa6.93□□□□□ -1.3
SMC4-227ENST00000497984 GGNQ86UU5 652 aa6.93□□□□□ -1.3
SMC4-227ENST00000497984 ADCY4Q8NFM4 1077 aa6.93□□□□□ -1.3
SMC4-227ENST00000497984 ZNF526Q8TF50 670 aaPredicted RBP6.93□□□□□ -1.3
SMC4-227ENST00000497984 GINM1Q9NU53 330 aa6.93□□□□□ -1.3
SMC4-227ENST00000497984 WHRNQ9P202 907 aa6.93□□□□□ -1.3
SMC4-227ENST00000497984 PPP1R11O60927 126 aaPredicted RBP6.92□□□□□ -1.3
SMC4-227ENST00000497984 B3GNT8Q7Z7M8 397 aa6.92□□□□□ -1.3
SMC4-227ENST00000497984 RGS22Q8NE09 1264 aa6.92□□□□□ -1.3
SMC4-227ENST00000497984 ALG3Q92685 438 aa6.92□□□□□ -1.3
SMC4-227ENST00000497984 RNF34Q969K3 372 aa6.92□□□□□ -1.3
SMC4-227ENST00000497984 TSPAN17Q96FV3 270 aa6.92□□□□□ -1.3
SMC4-227ENST00000497984 SPATA25Q9BR10 227 aa6.92□□□□□ -1.3
SMC4-227ENST00000497984 BDH2Q9BUT1 245 aa6.92□□□□□ -1.3
SMC4-227ENST00000497984 BCAS3Q9H6U6 928 aa6.92□□□□□ -1.3
SMC4-227ENST00000497984 RXFP1Q9HBX9 757 aa6.92□□□□□ -1.3
SMC4-227ENST00000497984 STXBP3O00186 592 aa6.91□□□□□ -1.3
SMC4-227ENST00000497984 PMLP29590 882 aa6.91□□□□□ -1.3
SMC4-227ENST00000497984 COL9A2Q14055 689 aaPredicted RBP6.91□□□□□ -1.3
SMC4-227ENST00000497984 GNPTABQ3T906 1256 aa6.91□□□□□ -1.3
SMC4-227ENST00000497984 MTA3Q9BTC8 594 aa6.91□□□□□ -1.3
SMC4-227ENST00000497984 DBR1Q9UK59 544 aaKnown RBP6.91□□□□□ -1.3
SMC4-227ENST00000497984 FAN1Q9Y2M0 1017 aa6.91□□□□□ -1.3
SMC4-227ENST00000497984 VAMP4O75379 141 aa6.9□□□□□ -1.3
SMC4-227ENST00000497984 SOX9P48436 509 aa6.9□□□□□ -1.3
SMC4-227ENST00000497984 PLP2Q04941 152 aa6.9□□□□□ -1.3
SMC4-227ENST00000497984 PAK2Q13177 524 aa6.9□□□□□ -1.3
SMC4-227ENST00000497984 NT5DC1Q5TFE4 455 aa6.9□□□□□ -1.3
SMC4-227ENST00000497984 C19orf47Q8N9M1 422 aaKnown RBP6.9□□□□□ -1.3
SMC4-227ENST00000497984 PHAXQ9H814 394 aaKnown RBP6.9□□□□□ -1.3
SMC4-227ENST00000497984 PCDHB10Q9UN67 800 aa6.9□□□□□ -1.3
SMC4-227ENST00000497984 RWDD3Q9Y3V2 267 aa6.9□□□□□ -1.3
SMC4-227ENST00000497984 SLC12A7Q9Y666 1083 aa6.9□□□□□ -1.3
SMC4-227ENST00000497984 A0A1W2PQH9 124 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 EPHX1P07099 455 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 GIPRP48546 466 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 DPY19L1Q2PZI1 675 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 SPATS1Q496A3 300 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 HEATR6Q6AI08 1181 aaKnown RBP6.89□□□□□ -1.31
SMC4-227ENST00000497984 ARHGEF39Q8N4T4 335 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 LZTR1Q8N653 840 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 NETO2Q8NC67 525 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 KLHL6Q8WZ60 621 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 FGD4Q96M96 766 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 NOX5Q96PH1 765 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 CGGBP1Q9UFW8 167 aaPredicted RBP6.89□□□□□ -1.31
SMC4-227ENST00000497984 BACE2Q9Y5Z0 518 aa6.89□□□□□ -1.31
SMC4-227ENST00000497984 RECKO95980 971 aa6.88□□□□□ -1.31
SMC4-227ENST00000497984 TRIM26Q12899 539 aaPredicted RBP6.88□□□□□ -1.31
SMC4-227ENST00000497984 CABP7Q86V35 215 aa6.88□□□□□ -1.31
SMC4-227ENST00000497984 CPNE8Q86YQ8 564 aa6.88□□□□□ -1.31
SMC4-227ENST00000497984 CARFQ8N187 725 aa6.88□□□□□ -1.31
SMC4-227ENST00000497984 CPA5Q8WXQ8 436 aa6.88□□□□□ -1.31
SMC4-227ENST00000497984 CRBNQ96SW2 442 aa6.88□□□□□ -1.31
SMC4-227ENST00000497984 GBP3Q9H0R5 595 aa6.88□□□□□ -1.31
SMC4-227ENST00000497984 EFR3BQ9Y2G0 817 aa6.88□□□□□ -1.31
SMC4-227ENST00000497984 C2orf71A6NGG8 1288 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 NOBOXO60393 691 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 SEPHS1P49903 392 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 EIF6P56537 245 aaKnown RBP6.87□□□□□ -1.31
SMC4-227ENST00000497984 SLC7A5Q01650 507 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 GRB10Q13322 594 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 UBXN11Q5T124 520 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 FERMT3Q86UX7 667 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 METTL16Q86W50 562 aaKnown RBP6.87□□□□□ -1.31
SMC4-227ENST00000497984 ZNF654Q8IZM8 581 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 ZNF513Q8N8E2 541 aaPredicted RBP6.87□□□□□ -1.31
SMC4-227ENST00000497984 SMARCC2Q8TAQ2 1214 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 RASGRP4Q8TDF6 673 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 PEX11GQ96HA9 241 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 RCC1LQ96I51 464 aaKnown RBP6.87□□□□□ -1.31
SMC4-227ENST00000497984 USP40Q9NVE5 1235 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 SPATA6Q9NWH7 488 aaPredicted RBP6.87□□□□□ -1.31
SMC4-227ENST00000497984 GULP1Q9UBP9 304 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 DUSP10Q9Y6W6 482 aa6.87□□□□□ -1.31
SMC4-227ENST00000497984 PPM1BO75688 479 aa6.86□□□□□ -1.31
SMC4-227ENST00000497984 AMPD2Q01433 879 aa6.86□□□□□ -1.31
SMC4-227ENST00000497984 CACNB2Q08289 660 aaPredicted RBP6.86□□□□□ -1.31
SMC4-227ENST00000497984 SLC9A5Q14940 896 aa6.86□□□□□ -1.31
SMC4-227ENST00000497984 ADAT2Q7Z6V5 191 aaKnown RBP6.86□□□□□ -1.31
SMC4-227ENST00000497984 OR6P1Q8NGX9 317 aa6.86□□□□□ -1.31
SMC4-227ENST00000497984 SPATA32Q96LK8 384 aa6.86□□□□□ -1.31
SMC4-227ENST00000497984 NUDT5Q9UKK9 219 aa6.86□□□□□ -1.31
SMC4-227ENST00000497984 CNOT11Q9UKZ1 510 aaKnown RBP6.86□□□□□ -1.31
SMC4-227ENST00000497984 PAMP19021 973 aa6.85□□□□□ -1.31
SMC4-227ENST00000497984 WWC2Q6AWC2 1192 aa6.85□□□□□ -1.31
SMC4-227ENST00000497984 HHIPL2Q6UWX4 724 aa6.85□□□□□ -1.31
SMC4-227ENST00000497984 BORCS6Q96GS4 357 aa6.85□□□□□ -1.31
SMC4-227ENST00000497984 LNPKQ9C0E8 428 aa6.85□□□□□ -1.31
SMC4-227ENST00000497984 NPHP3-ACAD11A0A0J9YXS1 232 aa6.84□□□□□ -1.31
SMC4-227ENST00000497984 C7orf72A4D263 438 aa6.84□□□□□ -1.31
SMC4-227ENST00000497984 SCAMP3O14828 347 aaKnown RBP6.84□□□□□ -1.31
SMC4-227ENST00000497984 ZBTB7AO95365 584 aa6.84□□□□□ -1.31
SMC4-227ENST00000497984 VAMP1P23763 118 aa6.84□□□□□ -1.31
SMC4-227ENST00000497984 GPRASP2Q96D09 838 aa6.84□□□□□ -1.31
SMC4-227ENST00000497984 SHDQ96IW2 340 aa6.84□□□□□ -1.31
SMC4-227ENST00000497984 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.84□□□□□ -1.31
SMC4-227ENST00000497984 APEX2Q9UBZ4 518 aa6.84□□□□□ -1.31
SMC4-227ENST00000497984 SIT1Q9Y3P8 196 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms