RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	MYH7B	A7E2Y1	1941 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	ELP1	O95163	1332 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	TNKS	O95271	1327 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	WDR19	Q8NEZ3	1342 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	TTC28	Q96AY4	2481 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	XIRP2	A4UGR9	3374 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	PTPDC1	A2A3K4	754 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	RAG1	P15918	1043 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	CALML3	P27482	149 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	FSCN1	Q16658	493 aa	Known RBP	13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	USH1G	Q495M9	461 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	CYB5R4	Q7L1T6	521 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	FAM126B	Q8IXS8	530 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	PCSK9	Q8NBP7	692 aa	Known RBP	13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	GLT1D1	Q96MS3	346 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	DOCK5	Q9H7D0	1870 aa		13.67	□□□□□ -0.22
VTI1A-208	ENST00000494728	UMODL1	Q5DID0	1318 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728		A0A0U1RQG5	324 aa	Predicted RBP	13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	ARVCF	O00192	962 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	PSMC6	P62333	389 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	RPS6	P62753	249 aa	Known RBP	13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	CDC37	Q16543	378 aa	Predicted RBP	13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	FAM109B	Q6ICB4	259 aa	Predicted RBP	13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	RNF207	Q6ZRF8	634 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	NOL8	Q76FK4	1167 aa	Known RBP	13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	DGKH	Q86XP1	1220 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	TBC1D5	Q92609	795 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	ANKS1A	Q92625	1134 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	TTYH1	Q9H313	450 aa	Predicted RBP	13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	VTA1	Q9NP79	307 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	ZSWIM5	Q9P217	1185 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	COL20A1	Q9P218	1284 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	PTPRS	Q13332	1948 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	TET1	Q8NFU7	2136 aa		13.66	□□□□□ -0.22
VTI1A-208	ENST00000494728	TRIP12	Q14669	1992 aa	Predicted RBP	13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	DCDC2C	A8MYV0	355 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	HIP1	O00291	1037 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	DYNC1LI2	O43237	492 aa	Predicted RBP	13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	CD4	P01730	458 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	EDNRB	P24530	442 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	PTH1R	Q03431	593 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	FPGS	Q05932	587 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	IMMT	Q16891	758 aa	Known RBP	13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	SLC35G1	Q2M3R5	365 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	C16orf59	Q7L2K0	433 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	STAG2	Q8N3U4	1231 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	SLC43A3	Q8NBI5	491 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	PPP1R13L	Q8WUF5	828 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.65	□□□□□ -0.22	7e-9	■■□□□ 12.4
VTI1A-208	ENST00000494728	PPP1R12C	Q9BZL4	782 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	SPC25	Q9HBM1	224 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	SENP2	Q9HC62	589 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	STXBP5L	Q9Y2K9	1186 aa		13.65	□□□□□ -0.22
VTI1A-208	ENST00000494728	RBAK-RBAKDN	I3L0D1	243 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	ARIH2	O95376	493 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	TIMP1	P01033	207 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	CHML	P26374	656 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	SEC23A	Q15436	765 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	DUSP28	Q4G0W2	176 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	GPATCH4	Q5T3I0	446 aa	Known RBP	13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	KIAA1211	Q6ZU35	1233 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	IQCA1	Q86XH1	822 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	ADGRF4	Q8IZF3	695 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	COPS5	Q92905	334 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	VTI1A	Q96AJ9	217 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	RNPC3	Q96LT9	517 aa	Known RBP	13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	KAT14	Q9H8E8	782 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	ADD3	Q9UEY8	706 aa	Known RBP	13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	MROH7	Q68CQ1	1323 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	RAD50	Q92878	1312 aa		13.64	□□□□□ -0.23
VTI1A-208	ENST00000494728	RBM47	A0AV96	593 aa	Known RBP	13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	OPLAH	O14841	1288 aa		13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	PPP1R11	O60927	126 aa	Predicted RBP	13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	CYP21A2	P08686	494 aa		13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	CSF2RA	P15509	400 aa		13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	COL9A3	Q14050	684 aa	Predicted RBP	13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	QRICH1	Q2TAL8	776 aa		13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	IQSEC1	Q6DN90	963 aa		13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	MFSD5	Q6N075	450 aa		13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	STOX1	Q6ZVD7	989 aa		13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	WDR11	Q9BZH6	1224 aa		13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	JMJD4	Q9H9V9	463 aa		13.63	□□□□□ -0.23
VTI1A-208	ENST00000494728	B4GALT4	O60513	344 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	ACR	P10323	421 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	CYP2C18	P33260	490 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	SMAD3	P84022	425 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	ITGA7	Q13683	1181 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	ASPRV1	Q53RT3	343 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	ZNF697	Q5TEC3	545 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	SKAP1	Q86WV1	359 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	VWCE	Q96DN2	955 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	AP5M1	Q9H0R1	490 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	TRPV6	Q9H1D0	765 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	WNT8A	Q9H1J5	351 aa		13.62	□□□□□ -0.23
VTI1A-208	ENST00000494728	PARP1	P09874	1014 aa	Known RBP	13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	PURA	Q00577	322 aa	Known RBP	13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	TMEM240	Q5SV17	173 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	IFIT1B	Q5T764	474 aa	Known RBP	13.61	□□□□□ -0.23

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