RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CRISPLD2Q9H0B8 497 aa18.85■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CNTNAP5Q8WYK1 1306 aa18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 MSCO60682 206 aa18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 SNAI1O95863 264 aaPredicted RBP18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 TFRCP02786 760 aaKnown RBP18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 PPP2R5BQ15173 497 aa18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 PURBQ96QR8 312 aaKnown RBP18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 FAM217BQ9NTX9 383 aaPredicted RBP18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 ADD3Q9UEY8 706 aaKnown RBP18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 DDX20Q9UHI6 824 aaKnown RBP18.84■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CCDC196A0A1B0GTZ2 297 aa18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 OPLAHO14841 1288 aa18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 SEPT4O43236 478 aa18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 CDC27P30260 824 aa18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ALDH5A1P51649 535 aaPredicted RBP18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 EVCP57679 992 aa18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 LHX8Q68G74 356 aa18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 TBC1D5Q92609 795 aa18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 FRMPD3Q5JV73 1810 aa18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 LRRC37A2A6NM11 1700 aa18.83■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 LOC102724159A0A0B4J2E5 919 aa18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 CFBP00751 764 aa18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ZNF865P0CJ78 1059 aaPredicted RBP18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 FUT2Q10981 343 aa18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 PWP2Q15269 919 aaKnown RBP18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 SAMD3Q8N6K7 520 aa18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 DNERQ8NFT8 737 aa18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ABHD16BQ9H3Z7 469 aa18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ZHX1Q9UKY1 873 aaPredicted RBP18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 OGDHLQ9ULD0 1010 aa18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 BAZ2BQ9UIF8 2168 aaKnown RBP18.82■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 hCG_1642624A0A1W2PR95 340 aa18.81■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 PDIA3P30101 505 aaKnown RBP18.81■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ADD1P35611 737 aaKnown RBP18.81■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 HSD17B4P51659 736 aa18.81■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 GHRHRQ02643 423 aa18.81■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ACVR2BQ13705 512 aa18.81■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 SYTL5Q8TDW5 730 aaPredicted RBP18.81■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 MORC4Q8TE76 937 aa18.81■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 MAP3K20Q9NYL2 800 aaKnown RBP18.81■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 FARP2O94887 1054 aaPredicted RBP18.8■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 AKR1A1P14550 325 aa18.8■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ANKLE1Q8NAG6 615 aa18.8■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ZNF274Q96GC6 653 aaPredicted RBP18.8■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 MPHOSPH6Q99547 160 aaKnown RBP18.8■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ALDH8A1Q9H2A2 487 aaPredicted RBP18.8■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 COL20A1Q9P218 1284 aa18.8■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 KIAA0100Q14667 2235 aaKnown RBP18.8■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 MCM3APO60318 1980 aa18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 B4DLN1 442 aa18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 GCOM1H8Y6P7 765 aaPredicted RBP18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 POLR2MP0CAP2 368 aa18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 MRPL12P52815 198 aaKnown RBP18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 CCT2P78371 535 aaKnown RBP18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 MLLT1Q03111 559 aaPredicted RBP18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ANKRD1Q15327 319 aa18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ANO1Q5XXA6 986 aa18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 TAAR1Q96RJ0 339 aa18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 LARP6Q9BRS8 491 aaKnown RBP18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 KATNBL1Q9H079 304 aa18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 FAM184BQ9ULE4 1060 aa18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 DDX49Q9Y6V7 483 aaKnown RBP18.79■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 RARBP10826 455 aa18.78■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 EDNRBP24530 442 aa18.78■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 HEATR3Q7Z4Q2 680 aa18.78■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 FBXO16Q8IX29 292 aaPredicted RBP18.78■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 NSUN6Q8TEA1 469 aaKnown RBP18.78■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 C22orf23Q9BZE7 217 aa18.78■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 NCOA5Q9HCD5 579 aaKnown RBP18.78■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 VTA1Q9NP79 307 aa18.78■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 V9GY48 417 aaPredicted RBP18.78■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 BRCA2P51587 3418 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 hCG_1984214I3L0E3 225 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 HOXA13P31271 388 aaPredicted RBP18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 AK2P54819 239 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 PDE4DQ08499 809 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 CCDC144BQ3MJ40 725 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ARHGEF16Q5VV41 709 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 WWC2Q6AWC2 1192 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 EEPD1Q7L9B9 569 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 UBE2Q1Q7Z7E8 422 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 ZNF713Q8N859 430 aaPredicted RBP18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 GPKOWQ92917 476 aaPredicted RBP eCLIP18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 RMDN3Q96TC7 470 aa18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 UPF2Q9HAU5 1272 aaKnown RBP18.77■□□□□ 0.6
MSH5-SAPCD1-206ENST00000491552 IFNAR1P17181 557 aa18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 EIF2AK2P19525 551 aaKnown RBP18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 RBM25P49756 843 aaKnown RBP18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 NEK4P51957 841 aa18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 STK3Q13188 491 aa18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 NTRK3Q16288 839 aa18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 DIS3LQ8TF46 1054 aaKnown RBP18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 CUL5Q93034 780 aa18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 LENG1Q96BZ8 264 aaPredicted RBP18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 IWS1Q96ST2 819 aa18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 XPNPEP3Q9NQH7 507 aa18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PXMP2Q9NR77 195 aa18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 RBM27Q9P2N5 1060 aaKnown RBP18.76■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 MNX1P50219 401 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms