RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 CCDC66A2RUB6 948 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 PRAMEF22A3QJZ6 481 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 GOLIM4O00461 696 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 CPLX1O14810 134 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 C21orf2O43822 256 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 STX10O60499 249 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 CUTAO60888 179 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 ZNF202O95125 648 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 BMP15O95972 392 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 NRLP54845 237 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 CABP4P57796 275 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 PLAURQ03405 335 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 APOBRQ0VD83 1088 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 STK3Q13188 491 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 NCAPHQ15003 741 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 SF3A1Q15459 793 aaKnown RBP6.68□□□□□ -1.34
VPS41-214ENST00000490924 ATP2B3Q16720 1220 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 RESP18Q5W5W9 173 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 DDX46Q7L014 1031 aaKnown RBP6.68□□□□□ -1.34
VPS41-214ENST00000490924 RALYLQ86SE5 291 aaKnown RBP6.68□□□□□ -1.34
VPS41-214ENST00000490924 FAM177A1Q8N128 213 aaPredicted RBP6.68□□□□□ -1.34
VPS41-214ENST00000490924 TMTC2Q8N394 836 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 C17orf53Q8N3J3 647 aaPredicted RBP6.68□□□□□ -1.34
VPS41-214ENST00000490924 MLKLQ8NB16 471 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 LPIN3Q9BQK8 851 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 SSBP4Q9BWG4 385 aaPredicted RBP6.68□□□□□ -1.34
VPS41-214ENST00000490924 CNNM2Q9H8M5 875 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 GOLGA2P5Q9HBQ8 144 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 ORC3Q9UBD5 711 aaPredicted RBP6.68□□□□□ -1.34
VPS41-214ENST00000490924 NRBP1Q9UHY1 535 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 DNAI1Q9UI46 699 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 USP16Q9Y5T5 823 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 V9GYY5 206 aaPredicted RBP6.68□□□□□ -1.34
VPS41-214ENST00000490924 LRP5O75197 1615 aa6.68□□□□□ -1.34
VPS41-214ENST00000490924 AFDNP55196 1824 aaKnown RBP6.67□□□□□ -1.34
VPS41-214ENST00000490924 CCDC196A0A1B0GTZ2 297 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 POM121CA8CG34 1229 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 EFCAB8A8MWE9 144 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 ZNF213O14771 459 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 PRC1O43663 620 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 SASH3O75995 380 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 UQCRFS1P1P0C7P4 283 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 PCP11498 1178 aaKnown RBP6.67□□□□□ -1.34
VPS41-214ENST00000490924 MYL6BP14649 208 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 GNAT2P19087 354 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 FSTP19883 344 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 ERCC5P28715 1186 aaPredicted RBP6.67□□□□□ -1.34
VPS41-214ENST00000490924 GRIK1P39086 918 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 NDUFA8P51970 172 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 DGKZQ13574 1117 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 CCDC57Q2TAC2 916 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 C11orf91Q3C1V1 193 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 E4F1Q66K89 784 aaPredicted RBP6.67□□□□□ -1.34
VPS41-214ENST00000490924 GDF6Q6KF10 455 aaPredicted RBP6.67□□□□□ -1.34
VPS41-214ENST00000490924 VSTM4Q8IW00 320 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 AOPEPQ8N6M6 819 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 SPATA20Q8TB22 786 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 POM121Q96HA1 1249 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 PPP1R13BQ96KQ4 1090 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 TCEANC2Q96MN5 208 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 ORAI2Q96SN7 254 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 PYM1Q9BRP8 204 aaKnown RBP6.67□□□□□ -1.34
VPS41-214ENST00000490924 NAA15Q9BXJ9 866 aaKnown RBP6.67□□□□□ -1.34
VPS41-214ENST00000490924 NLRP2Q9NX02 1062 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 ZNF215Q9UL58 517 aaPredicted RBP6.67□□□□□ -1.34
VPS41-214ENST00000490924 SPATA31A3Q5VYP0 1347 aa6.67□□□□□ -1.34
VPS41-214ENST00000490924 LRP6O75581 1613 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 GOLGA8BA8MQT2 603 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 SH2B2O14492 632 aaPredicted RBP6.66□□□□□ -1.34
VPS41-214ENST00000490924 FOXP2O15409 715 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 MICAL2O94851 1124 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 FGAP02671 866 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 PFKFB1P16118 471 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 GLB1P16278 677 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 IFNAR1P17181 557 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 TARSP26639 723 aaKnown RBP6.66□□□□□ -1.34
VPS41-214ENST00000490924 SSTR4P31391 388 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 INPP5BP32019 993 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 SYKP43405 635 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 SLC39A6Q13433 755 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 TCIRG1Q13488 830 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 PTPAQ15257 358 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 TERF2Q15554 542 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 DPCR1Q3MIW9 517 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 RILPL1Q5EBL4 403 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 TTC39AQ5SRH9 613 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 LCE3BQ5TA77 95 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 OLFM4Q6UX06 510 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 HFE2Q6ZVN8 426 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 ZBTB38Q8NAP3 1195 aaPredicted RBP6.66□□□□□ -1.34
VPS41-214ENST00000490924 KLHDC4Q8TBB5 520 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 ENOX1Q8TC92 643 aaKnown RBP6.66□□□□□ -1.34
VPS41-214ENST00000490924 OSBP2Q969R2 916 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 CCDC51Q96ER9 411 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 EDC3Q96F86 508 aaKnown RBP6.66□□□□□ -1.34
VPS41-214ENST00000490924 SPACA7Q96KW9 195 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 SEC62Q99442 399 aaKnown RBP6.66□□□□□ -1.34
VPS41-214ENST00000490924 FOXP1Q9H334 677 aaPredicted RBP6.66□□□□□ -1.34
VPS41-214ENST00000490924 KLK14Q9P0G3 267 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 CEP131Q9UPN4 1083 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms