RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 GSPT2Q8IYD1 628 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 KCTD17Q8N5Z5 321 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 TTC1Q99614 292 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 TRIM31Q9BZY9 425 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 ZC3H12CQ9C0D7 883 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 NEUROG2Q9H2A3 272 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 L2HGDHQ9H9P8 463 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 SLC39A2Q9NP94 309 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 NVLO15381 856 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 DNAJC6O75061 913 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 RAPGEF3O95398 923 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 TRIM14Q14142 442 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 HP1BP3Q5SSJ5 553 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 RAB44Q7Z6P3 723 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 FAM193BQ96PV7 902 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 PLEKHG4BQ96PX9 1271 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 KRT12Q99456 494 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 CNOT10Q9H9A5 744 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 PDP2Q9P2J9 529 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 HDAC6Q9UBN7 1215 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 BLOC1S6Q9UL45 172 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 LZTS1Q9Y250 596 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 PTPN23Q9H3S7 1636 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 ARHGEF35A5YM69 484 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 H0Y3Z8 333 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 ADCY3O60266 1144 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 NPR1P16066 1061 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 VSNL1P62760 191 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 MPP3Q13368 585 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 NAA35Q5VZE5 725 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 CATSPER2Q96P56 530 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 CCT8L2Q96SF2 557 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 NYXQ9GZU5 481 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 ZWILCHQ9H900 591 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 PARP2Q9UGN5 583 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 OCM2P0CE71 109 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 OCMP0CE72 109 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 GARSP41250 739 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 CCDC15Q0P6D6 951 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 TRIM60Q495X7 471 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 CCDC105Q8IYK2 499 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 SYCE1Q8N0S2 351 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 HNRNPLLQ8WVV9 542 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 ABHD8Q96I13 439 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 FAXDC2Q96IV6 333 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 PAWRQ96IZ0 340 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 CCDC138Q96M89 665 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 OLA1Q9NTK5 396 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 MROH2BQ7Z745 1585 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 INSRP06213 1382 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 FAM95CA0A1B0GW59 222 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 TYW5A2RUC4 315 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 SPTLC2O15270 562 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 ZNF202O95125 648 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 HDLBPQ00341 1268 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 BEND3Q5T5X7 828 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 POGZQ7Z3K3 1410 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 FAM133AQ8N9E0 248 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 PLIN2Q99541 437 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 SLF1Q9BQI6 1058 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 OSBPL10Q9BXB5 764 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 KRT82Q9NSB4 513 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 LMCD1Q9NZU5 365 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 SH3GLB1Q9Y371 365 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 TARSL2A2RTX5 802 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 E9PMD0 336 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 CAPN9O14815 690 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 GSTA4O15217 222 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 EFCAB14O75071 495 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 HSPA8P11142 646 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 LMNB1P20700 586 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 YARSP54577 528 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 CNNM4Q6P4Q7 775 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 REXO1L1PQ8IX06 675 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 DNAJC9Q8WXX5 260 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 ZSCAN32Q9NX65 697 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 ZNF180Q9UJW8 692 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 RPS6KL1Q9Y6S9 549 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 ATP5JP18859 108 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 POLR2BP30876 1174 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 STX2P32856 288 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 PLCD1P51178 756 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 TOGARAM2Q6ZUX3 1019 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 CDC37L1Q7L3B6 337 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 ARHGEF10LQ9HCE6 1279 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 MCM9Q9NXL9 1143 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 SPATA7Q9P0W8 599 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 INTUQ9ULD6 942 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 GJA3Q9Y6H8 435 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 CADPSQ9ULU8 1353 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 A0A1B0GVL5 298 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 M0R2C6 588 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 NAT1P18440 290 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 SERPINB6P35237 376 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 SCTRP47872 440 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 RNASE9P60153 205 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 SKOR1P84550 965 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 TSHZ3Q63HK5 1081 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms