RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 HAND2P61296 217 aa14.61□□□□□ -0.07
CPSF3-204ENST00000489403 PSMC6P62333 389 aa14.61□□□□□ -0.07
CPSF3-204ENST00000489403 NMIQ13287 307 aaPredicted RBP14.61□□□□□ -0.07
CPSF3-204ENST00000489403 SLC30A10Q6XR72 485 aa14.61□□□□□ -0.07
CPSF3-204ENST00000489403 IL23AQ9NPF7 189 aa14.61□□□□□ -0.07
CPSF3-204ENST00000489403 CCDC171Q6TFL3 1326 aa14.61□□□□□ -0.07
CPSF3-204ENST00000489403 PTPDC1A2A3K4 754 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 CCL23P55773 120 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 DUSP28Q4G0W2 176 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 TICAM2Q86XR7 235 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 TBC1D10CQ8IV04 446 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 USP38Q8NB14 1042 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 CLEC4DQ8WXI8 215 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 HERVK_113Q902F9 699 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 NOC4LQ9BVI4 516 aaKnown RBP14.6□□□□□ -0.07
CPSF3-204ENST00000489403 SEZ6LQ9BYH1 1024 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 TRPV6Q9H1D0 765 aa14.6□□□□□ -0.07
CPSF3-204ENST00000489403 CXXC1Q9P0U4 656 aaPredicted RBP14.6□□□□□ -0.07
CPSF3-204ENST00000489403 ADD3Q9UEY8 706 aaKnown RBP14.6□□□□□ -0.07
CPSF3-204ENST00000489403 LAMA4Q16363 1823 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 LOC102724159A0A0B4J2E5 919 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 TRIM6-TRIM34B2RNG4 842 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 SNHG28P0DPA3 235 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 ZNF543Q08ER8 600 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 PWP2Q15269 919 aaKnown RBP14.59□□□□□ -0.07
CPSF3-204ENST00000489403 AKNAD1Q5T1N1 836 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 RILPL2Q969X0 211 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 WDR11Q9BZH6 1224 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 LNPKQ9C0E8 428 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 WNT8AQ9H1J5 351 aa14.59□□□□□ -0.07
CPSF3-204ENST00000489403 RBM47A0AV96 593 aaKnown RBP14.58□□□□□ -0.08
CPSF3-204ENST00000489403 FGBP02675 491 aa14.58□□□□□ -0.08
CPSF3-204ENST00000489403 CALML3P27482 149 aa14.58□□□□□ -0.08
CPSF3-204ENST00000489403 PURAQ00577 322 aaKnown RBP14.58□□□□□ -0.08
CPSF3-204ENST00000489403 RNF207Q6ZRF8 634 aa14.58□□□□□ -0.08
CPSF3-204ENST00000489403 OTOP2Q7RTS6 562 aa14.58□□□□□ -0.08
CPSF3-204ENST00000489403 TTC14Q96N46 770 aa14.58□□□□□ -0.08
CPSF3-204ENST00000489403 ALDH8A1Q9H2A2 487 aaPredicted RBP14.58□□□□□ -0.08
CPSF3-204ENST00000489403 NEDD4P46934 1319 aa14.58□□□□□ -0.08
CPSF3-204ENST00000489403 WDR19Q8NEZ3 1342 aa14.58□□□□□ -0.08
CPSF3-204ENST00000489403 CUL9Q8IWT3 2517 aa14.57□□□□□ -0.08
CPSF3-204ENST00000489403 SCN10AQ9Y5Y9 1956 aa14.57□□□□□ -0.08
CPSF3-204ENST00000489403 PCP11498 1178 aaKnown RBP14.57□□□□□ -0.08
CPSF3-204ENST00000489403 EDNRBP24530 442 aa14.57□□□□□ -0.08
CPSF3-204ENST00000489403 RPS6P62753 249 aaKnown RBP14.57□□□□□ -0.08
CPSF3-204ENST00000489403 MFSD6Q6ZSS7 791 aa14.57□□□□□ -0.08
CPSF3-204ENST00000489403 OR6J1Q8NGC5 347 aa14.57□□□□□ -0.08
CPSF3-204ENST00000489403 VWCEQ96DN2 955 aa14.57□□□□□ -0.08
CPSF3-204ENST00000489403 SCLYQ96I15 445 aa14.57□□□□□ -0.08
CPSF3-204ENST00000489403 GAS2L1Q99501 681 aaPredicted RBP14.57□□□□□ -0.08
CPSF3-204ENST00000489403 MTIF3Q9H2K0 278 aaKnown RBP14.57□□□□□ -0.08
CPSF3-204ENST00000489403 PRDM12Q9H4Q4 367 aa14.57□□□□□ -0.08
CPSF3-204ENST00000489403 POLR3EQ9NVU0 708 aa14.57□□□□□ -0.08
CPSF3-204ENST00000489403 GOLGA8HP0CJ92 632 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 SDSP20132 328 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 CPT1AP50416 773 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 RAB30Q15771 203 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 DNERQ8NFT8 737 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 ZKSCAN3Q9BRR0 538 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 NKX2-4Q9H2Z4 354 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 RNF41Q9H4P4 317 aaPredicted RBP14.56□□□□□ -0.08
CPSF3-204ENST00000489403 PRDM6Q9NQX0 595 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 TRMT13Q9NUP7 481 aaKnown RBP14.56□□□□□ -0.08
CPSF3-204ENST00000489403 MSRAQ9UJ68 235 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 PNMA2Q9UL42 364 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 YBX2Q9Y2T7 364 aaKnown RBP14.56□□□□□ -0.08
CPSF3-204ENST00000489403 SCN5AQ14524 2016 aa14.56□□□□□ -0.08
CPSF3-204ENST00000489403 TANC1Q9C0D5 1861 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 CHD9Q3L8U1 2897 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 MYL3P08590 195 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 CYP2C9P11712 490 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 MFAP1P55081 439 aaKnown RBP14.55□□□□□ -0.08
CPSF3-204ENST00000489403 PDE4DQ08499 809 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 ADGRE1Q14246 886 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 PPP2R5BQ15173 497 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 USH1GQ495M9 461 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 GPATCH4Q5T3I0 446 aaKnown RBP14.55□□□□□ -0.08
CPSF3-204ENST00000489403 SMC5Q8IY18 1101 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 ESR2Q92731 530 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 COPS5Q92905 334 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 MTG1Q9BT17 334 aaPredicted RBP14.55□□□□□ -0.08
CPSF3-204ENST00000489403 UBA5Q9GZZ9 404 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 CPVLQ9H3G5 476 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 TNKSO95271 1327 aa14.55□□□□□ -0.08
CPSF3-204ENST00000489403 ZNF213O14771 459 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 NKRFO15226 690 aaKnown RBP eCLIP14.54□□□□□ -0.08
CPSF3-204ENST00000489403 SUPT20HL2P0C7V6 817 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 B4GALNT3Q6L9W6 998 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 DGKHQ86XP1 1220 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 PLEKHM2Q8IWE5 1019 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 RPUSD2Q8IZ73 545 aaKnown RBP14.54□□□□□ -0.08
CPSF3-204ENST00000489403 PPP1R13LQ8WUF5 828 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 PPM1EQ8WY54 764 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 SYMPKQ92797 1274 aaKnown RBP14.54□□□□□ -0.08
CPSF3-204ENST00000489403 MPHOSPH6Q99547 160 aaKnown RBP14.54□□□□□ -0.08
CPSF3-204ENST00000489403 OSBPL3Q9H4L5 887 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 GPHNQ9NQX3 736 aaPredicted RBP14.54□□□□□ -0.08
CPSF3-204ENST00000489403 RAD50Q92878 1312 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 CHD7Q9P2D1 2997 aa14.54□□□□□ -0.08
CPSF3-204ENST00000489403 ARIH2O95376 493 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms