RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 WDR78Q5VTH9 848 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 NCAPG2Q86XI2 1143 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 FBXO11Q86XK2 927 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 HSCBQ8IWL3 235 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 GTF3C6Q969F1 213 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 TMX3Q96JJ7 454 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 AGBL1Q96MI9 1066 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 PIGSQ96S52 555 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 AMNQ9BXJ7 453 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 SLC26A6Q9BXS9 759 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 R3HDMLQ9H3Y0 253 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 MROH8Q9H579 483 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 TSKSQ9UJT2 592 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 NID2Q14112 1375 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 LOC285556D6RIA3 1793 aa11.9□□□□□ -0.51
SKA1-204ENST00000488454 ADGRA2Q96PE1 1338 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 PRPF3O43395 683 aaKnown RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 PEX10O60683 326 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 FKTNO75072 461 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 FMNL1O95466 1100 aaPredicted RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 HSPA1AP0DMV8 641 aaKnown RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 HSPA1BP0DMV9 641 aaKnown RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 ALAS1P13196 640 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 MAPK4P31152 587 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 CTCFP49711 727 aaPredicted RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 USH1GQ495M9 461 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 NOM1Q5C9Z4 860 aaKnown RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 RIOX2Q8IUF8 465 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 CCDC83Q8IWF9 413 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 SHCBP1Q8NEM2 672 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 REPS2Q8NFH8 660 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 PHKBQ93100 1093 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 SNX21Q969T3 373 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 MTMR8Q96EF0 704 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 ERO1AQ96HE7 468 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 MOV10L1Q9BXT6 1211 aaKnown RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 RNF26Q9BY78 433 aaPredicted RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 FBXO40Q9UH90 709 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 ZNF214Q9UL59 606 aaPredicted RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 MRPL11Q9Y3B7 192 aaKnown RBP11.89□□□□□ -0.51
SKA1-204ENST00000488454 PCDHA1Q9Y5I3 950 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 IVNS1ABPQ9Y6Y0 642 aa11.89□□□□□ -0.51
SKA1-204ENST00000488454 PTPRFP10586 1907 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 hCG_1642624A0A1W2PR95 340 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 CD2BP2O95400 341 aaKnown RBP11.88□□□□□ -0.51
SKA1-204ENST00000488454 LARGE1O95461 756 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 ERCC3P19447 782 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 HOXD10P28358 340 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 FCGRTP55899 365 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 NTRK3Q16288 839 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 CHST13Q8NET6 341 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 WASF1Q92558 559 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 COA7Q96BR5 231 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 TRERF1Q96PN7 1200 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 LLPHQ9BRT6 129 aaKnown RBP11.88□□□□□ -0.51
SKA1-204ENST00000488454 HOMER2Q9NSB8 354 aa11.88□□□□□ -0.51
SKA1-204ENST00000488454 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.88□□□□□ -0.51
SKA1-204ENST00000488454 ZNF536O15090 1300 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 ABCB11O95342 1321 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 K7ELQ4 463 aaPredicted RBP11.87□□□□□ -0.51
SKA1-204ENST00000488454 TNPO2O14787 897 aaKnown RBP11.87□□□□□ -0.51
SKA1-204ENST00000488454 STRNO43815 780 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 PPFIA3O75145 1194 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 DEXIO95424 95 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 FCER1AP12319 257 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 XBP1P17861 261 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 PSMC4P43686 418 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 LACTBP83111 547 aaPredicted RBP11.87□□□□□ -0.51
SKA1-204ENST00000488454 FUT2Q10981 343 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 BECN1Q14457 450 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 SLC35G1Q2M3R5 365 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 HEATR3Q7Z4Q2 680 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 PLEKHH3Q7Z736 793 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 MCF2L2Q86YR7 1114 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 FAM184AQ8NB25 1140 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 ZNF296Q8WUU4 475 aaPredicted RBP11.87□□□□□ -0.51
SKA1-204ENST00000488454 MMP19Q99542 508 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 ACAD9Q9H845 621 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 EFCC1Q9HA90 598 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 RNF146Q9NTX7 359 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 ORC3Q9UBD5 711 aaPredicted RBP11.87□□□□□ -0.51
SKA1-204ENST00000488454 RIPK3Q9Y572 518 aa11.87□□□□□ -0.51
SKA1-204ENST00000488454 CNTNAP5Q8WYK1 1306 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 THSD7BQ9C0I4 1608 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 hCG_1984214I3L0E3 225 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 FOXN1O15353 648 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 HSP90AA1P07900 732 aaKnown RBP11.86□□□□□ -0.51
SKA1-204ENST00000488454 SCG2P13521 617 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 HMGN5P82970 282 aaKnown RBP11.86□□□□□ -0.51
SKA1-204ENST00000488454 KCTD2Q14681 263 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 PFKFB3Q16875 520 aaPredicted RBP11.86□□□□□ -0.51
SKA1-204ENST00000488454 PROX2Q3B8N5 592 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 ANKRD35Q8N283 1001 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 ZNF713Q8N859 430 aaPredicted RBP11.86□□□□□ -0.51
SKA1-204ENST00000488454 NSUN7Q8NE18 718 aaKnown RBP11.86□□□□□ -0.51
SKA1-204ENST00000488454 CD99L2Q8TCZ2 262 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 CCDC12Q8WUD4 166 aaPredicted RBP11.86□□□□□ -0.51
SKA1-204ENST00000488454 DDX11Q96FC9 970 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 PORCNQ9H237 461 aa11.86□□□□□ -0.51
SKA1-204ENST00000488454 KIF3AQ9Y496 699 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms