RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 USP48Q86UV5 1035 aa6.31□□□□□ -1.4
SMC4-220ENST00000488017 CABP7Q86V35 215 aa6.31□□□□□ -1.4
SMC4-220ENST00000488017 SLITRK4Q8IW52 837 aa6.31□□□□□ -1.4
SMC4-220ENST00000488017 FCRL3Q96P31 734 aaPredicted RBP6.31□□□□□ -1.4
SMC4-220ENST00000488017 SPATA6Q9NWH7 488 aaPredicted RBP6.31□□□□□ -1.4
SMC4-220ENST00000488017 ADAMTS1Q9UHI8 967 aa6.31□□□□□ -1.4
SMC4-220ENST00000488017 SF3B6Q9Y3B4 125 aaKnown RBP6.31□□□□□ -1.4
SMC4-220ENST00000488017 ACVRL1P37023 503 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 ZNF445P59923 1031 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 CACNB2Q08289 660 aaPredicted RBP6.3□□□□□ -1.4
SMC4-220ENST00000488017 TAB3Q8N5C8 712 aaPredicted RBP6.3□□□□□ -1.4
SMC4-220ENST00000488017 NETO2Q8NC67 525 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 SMARCC2Q8TAQ2 1214 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 NKD1Q969G9 470 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 LOXL4Q96JB6 756 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 NT5C1AQ9BXI3 368 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 WDR26Q9H7D7 661 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 GP6Q9HCN6 339 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 NUDT5Q9UKK9 219 aa6.3□□□□□ -1.4
SMC4-220ENST00000488017 ACRP10323 421 aa6.29□□□□□ -1.4
SMC4-220ENST00000488017 RBM10P98175 930 aaKnown RBP6.29□□□□□ -1.4
SMC4-220ENST00000488017 POU4F1Q01851 419 aa6.29□□□□□ -1.4
SMC4-220ENST00000488017 Q8N1X5 172 aa6.29□□□□□ -1.4
SMC4-220ENST00000488017 ADAMTS17Q8TE56 1095 aa6.29□□□□□ -1.4
SMC4-220ENST00000488017 PEX11GQ96HA9 241 aa6.29□□□□□ -1.4
SMC4-220ENST00000488017 C8orf49Q96NF6 230 aa6.29□□□□□ -1.4
SMC4-220ENST00000488017 NOX5Q96PH1 765 aa6.29□□□□□ -1.4
SMC4-220ENST00000488017 ZBTB7AO95365 584 aa6.28□□□□□ -1.4
SMC4-220ENST00000488017 IMPDH2P12268 514 aa6.28□□□□□ -1.4
SMC4-220ENST00000488017 TBC1D10BQ4KMP7 808 aaPredicted RBP6.28□□□□□ -1.4
SMC4-220ENST00000488017 RCSD1Q6JBY9 416 aa6.28□□□□□ -1.4
SMC4-220ENST00000488017 HS2ST1Q7LGA3 356 aa6.28□□□□□ -1.4
SMC4-220ENST00000488017 FIBCD1Q8N539 461 aa6.28□□□□□ -1.4
SMC4-220ENST00000488017 LINC00482Q8N8I6 264 aa6.28□□□□□ -1.4
SMC4-220ENST00000488017 PCDH18Q9HCL0 1135 aa6.28□□□□□ -1.4
SMC4-220ENST00000488017 GGT7Q9UJ14 662 aa6.28□□□□□ -1.4
SMC4-220ENST00000488017 A0A087WZG4 1122 aa6.27□□□□□ -1.41
SMC4-220ENST00000488017 SMARCA5O60264 1052 aaPredicted RBP6.27□□□□□ -1.41
SMC4-220ENST00000488017 CD247P20963 164 aa6.27□□□□□ -1.41
SMC4-220ENST00000488017 KIAA2012Q0VF49 1180 aa6.27□□□□□ -1.41
SMC4-220ENST00000488017 AXDND1Q5T1B0 1012 aaPredicted RBP6.27□□□□□ -1.41
SMC4-220ENST00000488017 DCAF15Q66K64 600 aa6.27□□□□□ -1.41
SMC4-220ENST00000488017 ZFPM1Q8IX07 1006 aa6.27□□□□□ -1.41
SMC4-220ENST00000488017 BRF1Q92994 677 aa6.27□□□□□ -1.41
SMC4-220ENST00000488017 DVL3Q92997 716 aaPredicted RBP6.27□□□□□ -1.41
SMC4-220ENST00000488017 CD3EP07766 207 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 ITGA4P13612 1032 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 IFNGR1P15260 489 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 TDRD10Q5VZ19 366 aaKnown RBP6.26□□□□□ -1.41
SMC4-220ENST00000488017 EEF1DP3Q658K8 133 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 PPFIBP1Q86W92 1011 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 LGI4Q8N135 537 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 LZTR1Q8N653 840 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 ZBTB8AQ96BR9 441 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 TM9SF2Q99805 663 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 ZNRF3Q9ULT6 936 aa6.26□□□□□ -1.41
SMC4-220ENST00000488017 DIS3Q9Y2L1 958 aaKnown RBP6.26□□□□□ -1.41
SMC4-220ENST00000488017 FAM86C2PA6NEL3 165 aa6.25□□□□□ -1.41
SMC4-220ENST00000488017 TAGLNQ01995 201 aaKnown RBP6.25□□□□□ -1.41
SMC4-220ENST00000488017 FAM26FQ5R3K3 315 aa6.25□□□□□ -1.41
SMC4-220ENST00000488017 CHST13Q8NET6 341 aa6.25□□□□□ -1.41
SMC4-220ENST00000488017 BCAS3Q9H6U6 928 aa6.25□□□□□ -1.41
SMC4-220ENST00000488017 CYP2C8P10632 490 aa6.24□□□□□ -1.41
SMC4-220ENST00000488017 ERCC3P19447 782 aa6.24□□□□□ -1.41
SMC4-220ENST00000488017 RPL13P26373 211 aaKnown RBP6.24□□□□□ -1.41
SMC4-220ENST00000488017 RGL3Q3MIN7 710 aa6.24□□□□□ -1.41
SMC4-220ENST00000488017 BORAQ6PGQ7 559 aa6.24□□□□□ -1.41
SMC4-220ENST00000488017 CRIP3Q6Q6R5 217 aa6.24□□□□□ -1.41
SMC4-220ENST00000488017 FAM124AQ86V42 546 aa6.24□□□□□ -1.41
SMC4-220ENST00000488017 SSBP3Q9BWW4 388 aaPredicted RBP6.24□□□□□ -1.41
SMC4-220ENST00000488017 NOL6Q9H6R4 1146 aaKnown RBP6.24□□□□□ -1.41
SMC4-220ENST00000488017 RXFP1Q9HBX9 757 aa6.24□□□□□ -1.41
SMC4-220ENST00000488017 ZNF451Q9Y4E5 1061 aa6.24□□□□□ -1.41
SMC4-220ENST00000488017 TCEAL1Q15170 157 aa6.23□□□□□ -1.41
SMC4-220ENST00000488017 ZDHHC15Q96MV8 337 aa6.23□□□□□ -1.41
SMC4-220ENST00000488017 MTA3Q9BTC8 594 aa6.23□□□□□ -1.41
SMC4-220ENST00000488017 INVSQ9Y283 1065 aa6.23□□□□□ -1.41
SMC4-220ENST00000488017 RWDD3Q9Y3V2 267 aa6.23□□□□□ -1.41
SMC4-220ENST00000488017 MROH6A6NGR9 719 aa6.22□□□□□ -1.41
SMC4-220ENST00000488017 AURKAO14965 403 aa6.22□□□□□ -1.41
SMC4-220ENST00000488017 THBS2P35442 1172 aa6.22□□□□□ -1.41
SMC4-220ENST00000488017 SMAD4Q13485 552 aaKnown RBP6.22□□□□□ -1.41
SMC4-220ENST00000488017 KIAA0825Q8IV33 1275 aa6.22□□□□□ -1.41
SMC4-220ENST00000488017 RNF34Q969K3 372 aa6.22□□□□□ -1.41
SMC4-220ENST00000488017 DDX11Q96FC9 970 aa6.22□□□□□ -1.41
SMC4-220ENST00000488017 FBLN5Q9UBX5 448 aa6.22□□□□□ -1.41
SMC4-220ENST00000488017 TSC22D4Q9Y3Q8 395 aa6.22□□□□□ -1.41
SMC4-220ENST00000488017 FZD7O75084 574 aa6.21□□□□□ -1.42
SMC4-220ENST00000488017 TP53P04637 393 aaPredicted RBP6.21□□□□□ -1.42
SMC4-220ENST00000488017 SURF1Q15526 300 aa6.21□□□□□ -1.42
SMC4-220ENST00000488017 WWC2Q6AWC2 1192 aa6.21□□□□□ -1.42
SMC4-220ENST00000488017 GLB1LQ6UWU2 654 aa6.21□□□□□ -1.42
SMC4-220ENST00000488017 USP51Q70EK9 711 aa6.21□□□□□ -1.42
SMC4-220ENST00000488017 KYQ8NBH2 561 aa6.21□□□□□ -1.42
SMC4-220ENST00000488017 KISS1RQ969F8 398 aaPredicted RBP6.21□□□□□ -1.42
SMC4-220ENST00000488017 GORASP1Q9BQQ3 440 aa6.21□□□□□ -1.42
SMC4-220ENST00000488017 C11orf84Q9BUA3 381 aaPredicted RBP6.21□□□□□ -1.42
SMC4-220ENST00000488017 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.21□□□□□ -1.42
SMC4-220ENST00000488017 ZNF214Q9UL59 606 aaPredicted RBP6.21□□□□□ -1.42
SMC4-220ENST00000488017 TRBV23OR9-2A0A075B6M9 112 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms