RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 KRT25Q7Z3Z0 450 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 RASGRP4Q8TDF6 673 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 BRI3BPQ8WY22 251 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 ATG4CQ96DT6 458 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 CLIC6Q96NY7 704 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 RANBP17Q9H2T7 1088 aaKnown RBP16.17■□□□□ 0.18
CUX1-209ENST00000487284 SMCHD1A6NHR9 2005 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 CCDC192P0DO97 292 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 HOXA7P31268 230 aaPredicted RBP16.17■□□□□ 0.18
CUX1-209ENST00000487284 ATP2C1P98194 919 aaPredicted RBP16.17■□□□□ 0.18
CUX1-209ENST00000487284 COG2Q14746 738 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 HHIPL1Q96JK4 782 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 PANK2Q9BZ23 570 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 A0A0G2JMZ2 1700 aa16.16■□□□□ 0.18
CUX1-209ENST00000487284 FAM155AB1AL88 458 aaPredicted RBP16.16■□□□□ 0.18
CUX1-209ENST00000487284 TAL1P17542 331 aaPredicted RBP16.16■□□□□ 0.18
CUX1-209ENST00000487284 DSG3P32926 999 aa16.16■□□□□ 0.18
CUX1-209ENST00000487284 CCDC174Q6PII3 467 aa16.16■□□□□ 0.18
CUX1-209ENST00000487284 CKAP2LQ8IYA6 745 aa16.16■□□□□ 0.18
CUX1-209ENST00000487284 FERMT2Q96AC1 680 aa16.16■□□□□ 0.18
CUX1-209ENST00000487284 COA7Q96BR5 231 aa16.16■□□□□ 0.18
CUX1-209ENST00000487284 TIGD1Q96MW7 591 aa16.16■□□□□ 0.18
CUX1-209ENST00000487284 SPDYE16A6NNV3 312 aaPredicted RBP16.15■□□□□ 0.18
CUX1-209ENST00000487284 ZNF202O95125 648 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 SYKP43405 635 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 ADCY7P51828 1080 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 IRX3P78415 501 aaPredicted RBP16.15■□□□□ 0.18
CUX1-209ENST00000487284 GRIN1Q05586 938 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 TYRO3Q06418 890 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 ZNF174Q15697 407 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 PAXIP1Q6ZW49 1069 aaPredicted RBP16.15■□□□□ 0.18
CUX1-209ENST00000487284 REXO1Q8N1G1 1221 aaKnown RBP16.15■□□□□ 0.18
CUX1-209ENST00000487284 ASCC2Q9H1I8 757 aaPredicted RBP16.15■□□□□ 0.18
CUX1-209ENST00000487284 SLC38A10Q9HBR0 1119 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 CREBZFQ9NS37 354 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 MRVI1Q9Y6F6 885 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 MYPNQ86TC9 1320 aa16.15■□□□□ 0.18
CUX1-209ENST00000487284 RBBP6Q7Z6E9 1792 aaKnown RBP16.15■□□□□ 0.18
CUX1-209ENST00000487284 BTBD19C9JJ37 291 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 GRM1Q13255 1194 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 PTGDRQ13258 359 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 PABPC4Q13310 644 aaKnown RBP eCLIP16.14■□□□□ 0.172e-20■■■■■ 62.1
CUX1-209ENST00000487284 CYP4F22Q6NT55 531 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 FBXO11Q86XK2 927 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 CCDC102AQ96A19 550 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 P2RX7Q99572 595 aaKnown RBP16.14■□□□□ 0.17
CUX1-209ENST00000487284 PTPN18Q99952 460 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 RIC8AQ9NPQ8 531 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 ADAMTS5Q9UNA0 930 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 ZNF536O15090 1300 aa16.14■□□□□ 0.17
CUX1-209ENST00000487284 MANSC4A6NHS7 340 aaPredicted RBP16.13■□□□□ 0.17
CUX1-209ENST00000487284 RASSF10A6NK89 507 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 VWA5AO00534 786 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 NONOQ15233 471 aaKnown RBP eCLIP16.13■□□□□ 0.17
CUX1-209ENST00000487284 INF2Q27J81 1249 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 USH1GQ495M9 461 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 FAM43AQ8N2R8 423 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 C4orf32Q8N8J7 132 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 REPS2Q8NFH8 660 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 AMNQ9BXJ7 453 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 HOXC10Q9NYD6 342 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 FAM13BQ9NYF5 915 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 KCNH3Q9ULD8 1083 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 PCDHA1Q9Y5I3 950 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 TESPA1A2RU30 521 aaPredicted RBP16.13■□□□□ 0.17
CUX1-209ENST00000487284 PDHXO00330 501 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 ZBED4O75132 1171 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 FDX1P10109 184 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 MCM7P33993 719 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 ARL6IP4Q66PJ3 421 aaKnown RBP16.13■□□□□ 0.17
CUX1-209ENST00000487284 POTEEQ6S8J3 1075 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 SASS6Q6UVJ0 657 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 ANKRD23Q86SG2 305 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 CPXCR1Q8N123 301 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 RNF214Q8ND24 703 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 ZIC5Q96T25 663 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 SDF4Q9BRK5 362 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 CSRNP2Q9H175 543 aa16.13■□□□□ 0.17
CUX1-209ENST00000487284 RAVER2Q9HCJ3 691 aaKnown RBP16.13■□□□□ 0.17
CUX1-209ENST00000487284 PEX10O60683 326 aa16.12■□□□□ 0.17
CUX1-209ENST00000487284 ICAM1P05362 532 aa16.12■□□□□ 0.17
CUX1-209ENST00000487284 CYP2C8P10632 490 aa16.12■□□□□ 0.17
CUX1-209ENST00000487284 OSBPP22059 807 aa16.12■□□□□ 0.17
CUX1-209ENST00000487284 CLK2P49760 499 aaKnown RBP16.12■□□□□ 0.17
CUX1-209ENST00000487284 HERVK_113P62684 666 aa16.12■□□□□ 0.17
CUX1-209ENST00000487284 ORC2Q13416 577 aaPredicted RBP16.12■□□□□ 0.17
CUX1-209ENST00000487284 DEFB115Q30KQ5 88 aa16.12■□□□□ 0.17
CUX1-209ENST00000487284 CUL5Q93034 780 aa16.12■□□□□ 0.17
CUX1-209ENST00000487284 AGBL1Q96MI9 1066 aa16.12■□□□□ 0.17
CUX1-209ENST00000487284 GLT8D2Q9H1C3 349 aa16.12■□□□□ 0.17
CUX1-209ENST00000487284 CTDP1Q9Y5B0 961 aaPredicted RBP16.12■□□□□ 0.17
CUX1-209ENST00000487284 IGF2BP3O00425 579 aaKnown RBP eCLIP16.11■□□□□ 0.17
CUX1-209ENST00000487284 LAD1O00515 517 aa16.11■□□□□ 0.17
CUX1-209ENST00000487284 TMEM132BQ14DG7 1078 aa16.11■□□□□ 0.17
CUX1-209ENST00000487284 UVSSAQ2YD98 709 aa16.11■□□□□ 0.17
CUX1-209ENST00000487284 LBX2Q6XYB7 198 aa16.11■□□□□ 0.17
CUX1-209ENST00000487284 NEK8Q86SG6 692 aa16.11■□□□□ 0.17
CUX1-209ENST00000487284 ELOA2Q8IYF1 753 aaPredicted RBP16.11■□□□□ 0.17
CUX1-209ENST00000487284 TMEM260Q9NX78 707 aa16.11■□□□□ 0.17
CUX1-209ENST00000487284 BIN2Q9UBW5 565 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms