RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, human

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-208	ENST00000485627	FOS	P01100	380 aa	Predicted RBP	10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	FDX1	P10109	184 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	VCAM1	P19320	739 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	PTGDR	Q13258	359 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	AP3B2	Q13367	1082 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	ORC2	Q13416	577 aa	Predicted RBP	10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	VGLL4	Q14135	290 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	MAP3K11	Q16584	847 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	UBE2S	Q16763	222 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	AXDND1	Q5T1B0	1012 aa	Predicted RBP	10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	L1TD1	Q5T7N2	865 aa	Known RBP	10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	LRSAM1	Q6UWE0	723 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	TEX2	Q8IWB9	1127 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	ANKRD13A	Q8IZ07	590 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	ZNF579	Q8NAF0	562 aa	Known RBP	10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	CCDC34	Q96HJ3	373 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	CLIC6	Q96NY7	704 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	SDF4	Q9BRK5	362 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	GOLPH3L	Q9H4A5	285 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	CLSTN2	Q9H4D0	955 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	ZNF408	Q9H9D4	720 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	EMILIN3	Q9NT22	766 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	FBXO28	Q9NVF7	368 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	TMEM260	Q9NX78	707 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	ABCB11	O95342	1321 aa		10.84	□□□□□ -0.67
CTSA-208	ENST00000485627	SSC5D	A1L4H1	1573 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	SPDYE3	A6NKU9	549 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	STK25	O00506	426 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	ADAMTS3	O15072	1205 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	PFKFB1	P16118	471 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	SYK	P43405	635 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	NDUFA8	P51970	172 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	HMGCS2	P54868	508 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	ATP2C1	P98194	919 aa	Predicted RBP	10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	CAMK4	Q16566	473 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	RESP18	Q5W5W9	173 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	ARL6IP4	Q66PJ3	421 aa	Known RBP	10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	SAPCD2	Q86UD0	394 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	C12orf42	Q96LP6	360 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	TSPY26P	Q9H489	355 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	EHMT1	Q9H9B1	1298 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	FBXO2	Q9UK22	296 aa	Predicted RBP	10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	PPP1R9A	Q9ULJ8	1098 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	AFG3L2	Q9Y4W6	797 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	SNCAIP	Q9Y6H5	919 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	ATAD5	Q96QE3	1844 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	DOCK1	Q14185	1865 aa		10.83	□□□□□ -0.68
CTSA-208	ENST00000485627	VWA3A	A6NCI4	1184 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L15	C9J2P7	530 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L13	C9JLJ4	530 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L11	C9JVI0	530 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L18	D6R9N7	530 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L22	D6RA61	530 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L17	D6RBQ6	530 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L19	D6RCP7	530 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L20	D6RJB6	530 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	GCOM1	H8Y6P7	765 aa	Predicted RBP	10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	MARCH6	O60337	910 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	NEMF	O60524	1076 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	ZNF202	O95125	648 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	ICAM1	P05362	532 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	POLR2M	P0CAP2	368 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	MAP2K2	P36507	400 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	TXLNA	P40222	546 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	CLK2	P49760	499 aa	Known RBP	10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L24	Q0WX57	530 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	ZRSR1	Q15695	479 aa	Known RBP	10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	USP17L6P	Q6QN14	398 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	SHC4	Q6S5L8	630 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	DTHD1	Q6ZMT9	781 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	ERO1B	Q86YB8	467 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	FMR1NB	Q8N0W7	255 aa	Predicted RBP	10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	ENGASE	Q8NFI3	743 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	ANO3	Q9BYT9	981 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	ELP3	Q9H9T3	547 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	HOOK1	Q9UJC3	728 aa	Known RBP	10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	KCNH3	Q9ULD8	1083 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	CCPG1	Q9ULG6	757 aa		10.82	□□□□□ -0.68
CTSA-208	ENST00000485627	WNT7A	O00755	349 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	CFB	P00751	764 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	OR52Z1	P0C646	297 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	CCDC192	P0DO97	292 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	GCFC2	P16383	781 aa	Known RBP	10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	LONP1	P36776	959 aa	Known RBP	10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	PPAT	Q06203	517 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	SNW1	Q13573	536 aa	Known RBP	10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	COG2	Q14746	738 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	SH3D19	Q5HYK7	790 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	SPECC1	Q5M775	1068 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	SASS6	Q6UVJ0	657 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	MCF2L2	Q86YR7	1114 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	TIGD1	Q96MW7	591 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	PYM1	Q9BRP8	204 aa	Known RBP	10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	CSRNP2	Q9H175	543 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	TRPM7	Q96QT4	1865 aa		10.81	□□□□□ -0.68
CTSA-208	ENST00000485627	POLR2A	P24928	1970 aa	Known RBP	10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	FAM237A	A0A1B0GTK4	181 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	CXCL11	O14625	94 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	MEIS2	O14770	477 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms