RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 N4BP3O15049 544 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 TUBB4AP04350 444 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 COPB1P53618 953 aaKnown RBP12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 STIM1Q13586 685 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 TMEM266Q2M3C6 531 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 DCAF4Q8WV16 495 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 CPLX3Q8WVH0 158 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 C7orf43Q8WVR3 580 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 CCDC47Q96A33 483 aaKnown RBP12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 VPS16Q9H269 839 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 KANSL2Q9H9L4 492 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 NYAP2Q9P242 653 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 LRWD1Q9UFC0 647 aa12.39□□□□□ -0.43
HLA-DMB-260ENST00000477537 MYH7BA7E2Y1 1941 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 LRRC10BA6NIK2 292 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 NPM3O75607 178 aaKnown RBP12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 SLC1A4P43007 532 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 CLK2P49760 499 aaKnown RBP12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 FXR2P51116 673 aaKnown RBP eCLIP12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 MRPL12P52815 198 aaKnown RBP12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 ASIC1P78348 528 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 SEMA3FQ13275 785 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 SEPT2Q15019 361 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 SLFN13Q68D06 897 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 TOGARAM2Q6ZUX3 1019 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 GIMAP8Q8ND71 665 aaPredicted RBP12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 NLGN2Q8NFZ4 835 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 MKL1Q969V6 931 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 PANX2Q96RD6 677 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 C7orf25Q9BPX7 421 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 TRIM9Q9C026 710 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 TDRD3Q9H7E2 651 aaKnown RBP12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 EXOC1Q9NV70 894 aa12.38□□□□□ -0.43
HLA-DMB-260ENST00000477537 PSMA7O14818 248 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 GDF11O95390 407 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 KCNA3P22001 575 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 PMS1P54277 932 aaKnown RBP12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 ETF1P62495 437 aaKnown RBP12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 AMPD3Q01432 767 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 PDE4DQ08499 809 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 NCBP1Q09161 790 aaKnown RBP12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 GRB10Q13322 594 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 SYCP1Q15431 976 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 QRICH1Q2TAL8 776 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 TATDN1Q6P1N9 297 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 SUPT20HQ8NEM7 779 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 ANKRD7Q92527 254 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 PSTPIP2Q9H939 334 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 ITIH6Q6UXX5 1313 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 PPIP5K2O43314 1243 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 MFAP3LO75121 409 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 CASP14P31944 242 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 ICA1Q05084 483 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 ABCB5Q2M3G0 1257 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 TRIM65Q6PJ69 517 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 TMEM179Q6ZVK1 233 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 DHTKD1Q96HY7 919 aaPredicted RBP12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 CDK5RAP3Q96JB5 506 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 TRIM47Q96LD4 638 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 PNMA5Q96PV4 448 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 RAB34Q9BZG1 259 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 DDX25Q9UHL0 483 aaKnown RBP12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 DNAI1Q9UI46 699 aa12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.37□□□□□ -0.43
HLA-DMB-260ENST00000477537 ARFGEF1Q9Y6D6 1849 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 POTEMA6NI47 508 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 YDJCA8MPS7 323 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 C21orf2O43822 256 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 GYPCP04921 128 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 TPM1P09493 284 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 NAA30Q147X3 362 aaPredicted RBP12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 CDC37Q16543 378 aaPredicted RBP12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 PPP4R3AQ6IN85 833 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 SV2BQ7L1I2 683 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 IRF2BP1Q8IU81 584 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 SIAH1Q8IUQ4 282 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 DESI2Q9BSY9 194 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 SRRTQ9BXP5 876 aaKnown RBP12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 THAP9Q9H5L6 903 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 ZNF215Q9UL58 517 aaPredicted RBP12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 PHLPP2Q6ZVD8 1323 aa12.36□□□□□ -0.43
HLA-DMB-260ENST00000477537 BRCA1P38398 1863 aaKnown RBP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 GOLGA6L9A6NEM1 432 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 SOWAHDA6NJG2 315 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 ENTPD3O75355 529 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 UBXN1Q04323 297 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 PDIA5Q14554 519 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 MCM6Q14566 821 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 MTF1Q14872 753 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 KRT79Q5XKE5 535 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 CC2D2BQ6DHV5 1058 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 CNGA4Q8IV77 575 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 SNX29Q8TEQ0 813 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 PRMT6Q96LA8 375 aaPredicted RBP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 NAA15Q9BXJ9 866 aaKnown RBP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 FHDC1Q9C0D6 1143 aaPredicted RBP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 BLOC1S4Q9NUP1 217 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 STK17AQ9UEE5 414 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 PCDHA1Q9Y5I3 950 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 USP17L15C9J2P7 530 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms