RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CALML3P27482 149 aa23.18■■□□□ 1.3
COL9A3-210ENST00000472880 RNF207Q6ZRF8 634 aa23.18■■□□□ 1.3
COL9A3-210ENST00000472880 DGKHQ86XP1 1220 aa23.18■■□□□ 1.3
COL9A3-210ENST00000472880 MPHOSPH6Q99547 160 aaKnown RBP23.18■■□□□ 1.3
COL9A3-210ENST00000472880 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.18■■□□□ 1.32e-16■□□□□ 9
COL9A3-210ENST00000472880 CD4P01730 458 aa23.17■■□□□ 1.3
COL9A3-210ENST00000472880 ITGA7Q13683 1181 aa23.17■■□□□ 1.3
COL9A3-210ENST00000472880 CCDC178Q5BJE1 867 aa23.17■■□□□ 1.3
COL9A3-210ENST00000472880 SLC43A3Q8NBI5 491 aa23.17■■□□□ 1.3
COL9A3-210ENST00000472880 CLEC4DQ8WXI8 215 aa23.17■■□□□ 1.3
COL9A3-210ENST00000472880 SEZ6LQ9BYH1 1024 aa23.17■■□□□ 1.3
COL9A3-210ENST00000472880 TTYH1Q9H313 450 aaPredicted RBP23.17■■□□□ 1.3
COL9A3-210ENST00000472880 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-210ENST00000472880 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-210ENST00000472880 KDM4AO75164 1064 aa23.16■■□□□ 1.3
COL9A3-210ENST00000472880 CSF2RAP15509 400 aa23.16■■□□□ 1.3
COL9A3-210ENST00000472880 DUSP28Q4G0W2 176 aa23.16■■□□□ 1.3
COL9A3-210ENST00000472880 TMEM63BQ5T3F8 832 aa23.16■■□□□ 1.3
COL9A3-210ENST00000472880 PNMA1Q8ND90 353 aa23.16■■□□□ 1.3
COL9A3-210ENST00000472880 DSCC1Q9BVC3 393 aa23.16■■□□□ 1.3
COL9A3-210ENST00000472880 KAT14Q9H8E8 782 aa23.16■■□□□ 1.3
COL9A3-210ENST00000472880 B4E1Z4 1266 aa23.15■■□□□ 1.3
COL9A3-210ENST00000472880 GOLGA8HP0CJ92 632 aa23.15■■□□□ 1.3
COL9A3-210ENST00000472880 RPS6P62753 249 aaKnown RBP23.15■■□□□ 1.3
COL9A3-210ENST00000472880 PDE4DQ08499 809 aa23.15■■□□□ 1.3
COL9A3-210ENST00000472880 IMMTQ16891 758 aaKnown RBP23.15■■□□□ 1.3
COL9A3-210ENST00000472880 USH1GQ495M9 461 aa23.15■■□□□ 1.3
COL9A3-210ENST00000472880 PSRC1Q6PGN9 363 aaPredicted RBP23.15■■□□□ 1.3
COL9A3-210ENST00000472880 WDR11Q9BZH6 1224 aa23.15■■□□□ 1.3
COL9A3-210ENST00000472880 DNAJB2P25686 324 aa23.14■■□□□ 1.29
COL9A3-210ENST00000472880 CYP2C18P33260 490 aa23.14■■□□□ 1.29
COL9A3-210ENST00000472880 TMEM240Q5SV17 173 aa23.14■■□□□ 1.29
COL9A3-210ENST00000472880 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.14■■□□□ 1.29
COL9A3-210ENST00000472880 MYLIPQ8WY64 445 aa23.14■■□□□ 1.29
COL9A3-210ENST00000472880 HIPK3Q9H422 1215 aa23.14■■□□□ 1.29
COL9A3-210ENST00000472880 CTNNA3Q9UI47 895 aa23.14■■□□□ 1.29
COL9A3-210ENST00000472880 B4DLN1 442 aa23.13■■□□□ 1.29
COL9A3-210ENST00000472880 CPT1AP50416 773 aa23.13■■□□□ 1.29
COL9A3-210ENST00000472880 MRPL12P52815 198 aaKnown RBP23.13■■□□□ 1.29
COL9A3-210ENST00000472880 PSMC6P62333 389 aa23.13■■□□□ 1.29
COL9A3-210ENST00000472880 DNERQ8NFT8 737 aa23.13■■□□□ 1.29
COL9A3-210ENST00000472880 OR6J1Q8NGC5 347 aa23.13■■□□□ 1.29
COL9A3-210ENST00000472880 MAFAQ8NHW3 353 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-210ENST00000472880 ZSCAN10Q96SZ4 725 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-210ENST00000472880 UBA5Q9GZZ9 404 aa23.13■■□□□ 1.29
COL9A3-210ENST00000472880 CPVLQ9H3G5 476 aa23.13■■□□□ 1.29
COL9A3-210ENST00000472880 POLR3EQ9NVU0 708 aa23.13■■□□□ 1.29
COL9A3-210ENST00000472880 GRIN2DO15399 1336 aa23.12■■□□□ 1.29
COL9A3-210ENST00000472880 RAD50Q92878 1312 aa23.12■■□□□ 1.29
COL9A3-210ENST00000472880 RBM47A0AV96 593 aaKnown RBP23.12■■□□□ 1.29
COL9A3-210ENST00000472880 ACRP10323 421 aa23.12■■□□□ 1.29
COL9A3-210ENST00000472880 FOSL2P15408 326 aa23.12■■□□□ 1.29
COL9A3-210ENST00000472880 PPP2R5BQ15173 497 aa23.12■■□□□ 1.29
COL9A3-210ENST00000472880 CDC37Q16543 378 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-210ENST00000472880 ASPRV1Q53RT3 343 aa23.12■■□□□ 1.29
COL9A3-210ENST00000472880 C16orf59Q7L2K0 433 aa23.12■■□□□ 1.29
COL9A3-210ENST00000472880 KRT23Q9C075 422 aa23.12■■□□□ 1.29
COL9A3-210ENST00000472880 TNKSO95271 1327 aa23.11■■□□□ 1.29
COL9A3-210ENST00000472880 B4GALT4O60513 344 aa23.11■■□□□ 1.29
COL9A3-210ENST00000472880 EDNRBP24530 442 aa23.11■■□□□ 1.29
COL9A3-210ENST00000472880 BRDTQ58F21 947 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-210ENST00000472880 ZNF365Q70YC5 407 aa23.11■■□□□ 1.29
COL9A3-210ENST00000472880 ENAHQ8N8S7 591 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-210ENST00000472880 SCFD2Q8WU76 684 aa23.11■■□□□ 1.29
COL9A3-210ENST00000472880 UBAC1Q9BSL1 405 aa23.11■■□□□ 1.29
COL9A3-210ENST00000472880 TRPV6Q9H1D0 765 aa23.11■■□□□ 1.29
COL9A3-210ENST00000472880 CNNM2Q9H8M5 875 aa23.11■■□□□ 1.29
COL9A3-210ENST00000472880 IL23AQ9NPF7 189 aa23.11■■□□□ 1.29
COL9A3-210ENST00000472880 ABCB11O95342 1321 aa23.1■■□□□ 1.29
COL9A3-210ENST00000472880 NKRFO15226 690 aaKnown RBP eCLIP23.1■■□□□ 1.29
COL9A3-210ENST00000472880 DHX16O60231 1041 aaKnown RBP23.1■■□□□ 1.29
COL9A3-210ENST00000472880 MYL3P08590 195 aa23.1■■□□□ 1.29
COL9A3-210ENST00000472880 RGS22Q8NE09 1264 aa23.1■■□□□ 1.29
COL9A3-210ENST00000472880 ANKS1AQ92625 1134 aa23.1■■□□□ 1.29
COL9A3-210ENST00000472880 TIFAQ96CG3 184 aa23.1■■□□□ 1.29
COL9A3-210ENST00000472880 MTIF3Q9H2K0 278 aaKnown RBP23.1■■□□□ 1.29
COL9A3-210ENST00000472880 GPHNQ9NQX3 736 aaPredicted RBP23.1■■□□□ 1.29
COL9A3-210ENST00000472880 ZSWIM5Q9P217 1185 aa23.1■■□□□ 1.29
COL9A3-210ENST00000472880 UMODL1Q5DID0 1318 aa23.09■■□□□ 1.29
COL9A3-210ENST00000472880 PARP1P09874 1014 aaKnown RBP23.09■■□□□ 1.29
COL9A3-210ENST00000472880 PURAQ00577 322 aaKnown RBP23.09■■□□□ 1.29
COL9A3-210ENST00000472880 RASIP1Q5U651 963 aa23.09■■□□□ 1.29
COL9A3-210ENST00000472880 ADGRF4Q8IZF3 695 aa23.09■■□□□ 1.29
COL9A3-210ENST00000472880 NOC4LQ9BVI4 516 aaKnown RBP23.09■■□□□ 1.29
COL9A3-210ENST00000472880 ALDH8A1Q9H2A2 487 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-210ENST00000472880 CCL23P55773 120 aa23.08■■□□□ 1.29
COL9A3-210ENST00000472880 MTG1Q9BT17 334 aaPredicted RBP23.08■■□□□ 1.29
COL9A3-210ENST00000472880 MAF1Q9H063 256 aa23.08■■□□□ 1.29
COL9A3-210ENST00000472880 SUPT20HL2P0C7V6 817 aa23.07■■□□□ 1.28
COL9A3-210ENST00000472880 MCF2L2Q86YR7 1114 aa23.07■■□□□ 1.28
COL9A3-210ENST00000472880 HERVK_113Q902F9 699 aa23.07■■□□□ 1.28
COL9A3-210ENST00000472880 ZNF576Q9H609 170 aa23.07■■□□□ 1.28
COL9A3-210ENST00000472880 FGBP02675 491 aa23.06■■□□□ 1.28
COL9A3-210ENST00000472880 TXNP10599 105 aaKnown RBP23.06■■□□□ 1.28
COL9A3-210ENST00000472880 TTLL4Q14679 1199 aa23.06■■□□□ 1.28
COL9A3-210ENST00000472880 GRIN2CQ14957 1233 aa23.06■■□□□ 1.28
COL9A3-210ENST00000472880 QRICH1Q2TAL8 776 aa23.06■■□□□ 1.28
COL9A3-210ENST00000472880 FAM47CQ5HY64 1035 aa23.06■■□□□ 1.28
COL9A3-210ENST00000472880 IFIT1BQ5T764 474 aaKnown RBP23.06■■□□□ 1.28
COL9A3-210ENST00000472880 TTC22Q5TAA0 569 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms