RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 TEX2Q8IWB9 1127 aa21.5■■□□□ 1.03
SMC4-209ENST00000468653 DHX58Q96C10 678 aa21.5■■□□□ 1.03
SMC4-209ENST00000468653 CCDC34Q96HJ3 373 aa21.5■■□□□ 1.03
SMC4-209ENST00000468653 TMOD4Q9NZQ9 345 aa21.5■■□□□ 1.03
SMC4-209ENST00000468653 CCPG1Q9ULG6 757 aa21.5■■□□□ 1.03
SMC4-209ENST00000468653 PPP1R9AQ9ULJ8 1098 aa21.5■■□□□ 1.03
SMC4-209ENST00000468653 PIK3CDO00329 1044 aa21.49■■□□□ 1.03
SMC4-209ENST00000468653 EDIL3O43854 480 aa21.49■■□□□ 1.03
SMC4-209ENST00000468653 ICAM1P05362 532 aa21.49■■□□□ 1.03
SMC4-209ENST00000468653 KANK3Q6NY19 840 aa21.49■■□□□ 1.03
SMC4-209ENST00000468653 PNMA8AQ86V59 439 aaPredicted RBP21.49■■□□□ 1.03
SMC4-209ENST00000468653 ELOA2Q8IYF1 753 aaPredicted RBP21.49■■□□□ 1.03
SMC4-209ENST00000468653 C12orf42Q96LP6 360 aa21.49■■□□□ 1.03
SMC4-209ENST00000468653 PYM1Q9BRP8 204 aaKnown RBP21.49■■□□□ 1.03
SMC4-209ENST00000468653 AFG3L2Q9Y4W6 797 aa21.49■■□□□ 1.03
SMC4-209ENST00000468653 SNCAIPQ9Y6H5 919 aa21.49■■□□□ 1.03
SMC4-209ENST00000468653 CFBP00751 764 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 HOXA13P31271 388 aaPredicted RBP21.48■■□□□ 1.03
SMC4-209ENST00000468653 USP11P51784 963 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 ANO10Q9NW15 660 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 DDX25Q9UHL0 483 aaKnown RBP21.48■■□□□ 1.03
SMC4-209ENST00000468653 A0A087X0B3 334 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 GCOM1H8Y6P7 765 aaPredicted RBP21.48■■□□□ 1.03
SMC4-209ENST00000468653 SLC37A4O43826 429 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 POLR2MP0CAP2 368 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 TTLL12Q14166 644 aaPredicted RBP21.48■■□□□ 1.03
SMC4-209ENST00000468653 CEP57L1Q8IYX8 460 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 AGBL1Q96MI9 1066 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 SLC38A10Q9HBR0 1119 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 USP25Q9UHP3 1055 aa21.48■■□□□ 1.03
SMC4-209ENST00000468653 SCN4AP35499 1836 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 POTECB2RU33 542 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 ACTN4O43707 911 aaKnown RBP21.47■■□□□ 1.03
SMC4-209ENST00000468653 ZBED4O75132 1171 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 FDX1P10109 184 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 ARHGAP4P98171 946 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 PNOCQ13519 176 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 UVSSAQ2YD98 709 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 FCHSD1Q86WN1 690 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 CPXCR1Q8N123 301 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 RBM46Q8TBY0 533 aaKnown RBP21.47■■□□□ 1.03
SMC4-209ENST00000468653 FAM200AQ8TCP9 573 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 AK8Q96MA6 479 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 MTMR9Q96QG7 549 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 DNAJC25Q9H1X3 360 aa21.47■■□□□ 1.03
SMC4-209ENST00000468653 CAVIN2O95810 425 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 SLFN14P0C7P3 912 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 UBA7P41226 1012 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 TXKP42681 527 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 IQUBQ8NA54 791 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 P2RX7Q99572 595 aaKnown RBP21.46■■□□□ 1.03
SMC4-209ENST00000468653 CLEC11AQ9Y240 323 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 ZNF536O15090 1300 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 MARCH6O60337 910 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 CDC25AP30304 524 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 SREBF1P36956 1147 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 TECP42680 631 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 POSTNQ15063 836 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 TMEM266Q2M3C6 531 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 RASSF8Q8NHQ8 419 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 TBC1D5Q92609 795 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 RAVER2Q9HCJ3 691 aaKnown RBP21.46■■□□□ 1.03
SMC4-209ENST00000468653 PNMA2Q9UL42 364 aa21.46■■□□□ 1.03
SMC4-209ENST00000468653 PHIPQ8WWQ0 1821 aa21.45■■□□□ 1.02
SMC4-209ENST00000468653 MYH7BA7E2Y1 1941 aa21.45■■□□□ 1.02
SMC4-209ENST00000468653 BIN1O00499 593 aa21.45■■□□□ 1.02
SMC4-209ENST00000468653 MDM2Q00987 491 aaPredicted RBP21.45■■□□□ 1.02
SMC4-209ENST00000468653 MOXD1Q6UVY6 613 aa21.45■■□□□ 1.02
SMC4-209ENST00000468653 TUBE1Q9UJT0 475 aa21.45■■□□□ 1.02
SMC4-209ENST00000468653 SMCHD1A6NHR9 2005 aa21.45■■□□□ 1.02
SMC4-209ENST00000468653 A0A087WWV3 80 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 VWA5AO00534 786 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 FOXN1O15353 648 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 ZNF165P49910 485 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 SH3D19Q5HYK7 790 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 ANKRD13AQ8IZ07 590 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 ATG4CQ96DT6 458 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 RAB34Q9BZG1 259 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 CCSER1Q9C0I3 900 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 EHMT1Q9H9B1 1298 aa21.44■■□□□ 1.02
SMC4-209ENST00000468653 CYP3A7-CYP3A51PA0A087WV96 503 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 PP2D1A8MPX8 630 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 ALAS1P13196 640 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 CYP3A7P24462 503 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 COG2Q14746 738 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 CRYGNQ8WXF5 182 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 ELP3Q9H9T3 547 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 CBX8Q9HC52 389 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 CCDC39Q9UFE4 941 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 PCDHA5Q9Y5H7 936 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 DSG3P32926 999 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 STAT6P42226 847 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 FXR2P51116 673 aaKnown RBP eCLIP21.43■■□□□ 1.022e-10■■■■■ 37.2
SMC4-209ENST00000468653 NLRP12P59046 1061 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 KARSQ15046 597 aaKnown RBP21.43■■□□□ 1.02
SMC4-209ENST00000468653 E2F4Q16254 413 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 CATSPERGQ6ZRH7 1159 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 C11orf57Q6ZUT1 292 aaPredicted RBP21.43■■□□□ 1.02
SMC4-209ENST00000468653 MOB2Q70IA6 237 aa21.43■■□□□ 1.02
SMC4-209ENST00000468653 ARMC9Q7Z3E5 817 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms