RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 RPUSD2Q8IZ73 545 aaKnown RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 FLCNQ8NFG4 579 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 EDC3Q96F86 508 aaKnown RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 RPGRIP1Q96KN7 1286 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 PUS7Q96PZ0 661 aaKnown RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 KLF16Q9BXK1 252 aaPredicted RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 RXFP3Q9NSD7 469 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 ARAP2Q8WZ64 1704 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 ABCA2Q9BZC7 2435 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 SEPT4O43236 478 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 CCL23P55773 120 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 FUT2Q10981 343 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 KREMEN2Q8NCW0 462 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 TGS1Q96RS0 853 aaKnown RBP6.66□□□□□ -1.34
HMGB1-207ENST00000468384 TBC1D2Q9BYX2 928 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 STARD7Q9NQZ5 370 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 ZNF112Q9UJU3 913 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 ZHX2Q9Y6X8 837 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 UMODL1Q5DID0 1318 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 MROH7Q68CQ1 1323 aa6.66□□□□□ -1.34
HMGB1-207ENST00000468384 NBEAL1Q6ZS30 2694 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 MYO7AQ13402 2215 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 DOPEY2Q9Y3R5 2298 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 PEX10O60683 326 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 EYA4O95677 639 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 BRD1O95696 1058 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 SP9P0CG40 484 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 BMP2P12643 396 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 CDK7P50613 346 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 MMP16P51512 607 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 SNRPNP63162 240 aaKnown RBP6.65□□□□□ -1.34
HMGB1-207ENST00000468384 MCTP1Q6DN14 999 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 GPR142Q7Z601 462 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 PLEKHH3Q7Z736 793 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 RNF180Q86T96 592 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 ZNF843Q8N446 348 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 TRAIPQ9BWF2 469 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 NSUN3Q9H649 340 aaKnown RBP6.65□□□□□ -1.34
HMGB1-207ENST00000468384 ZFAND3Q9H8U3 227 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 LIMD1Q9UGP4 676 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 TRMT112Q9UI30 125 aaKnown RBP6.65□□□□□ -1.34
HMGB1-207ENST00000468384 WASF3Q9UPY6 502 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 AFG3L2Q9Y4W6 797 aa6.65□□□□□ -1.34
HMGB1-207ENST00000468384 ITPR2Q14571 2701 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 TBX10O75333 385 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 ADH1CP00326 375 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 IGHA2P01877 340 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 MTMR3Q13615 1198 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 GAS6Q14393 721 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 SV2AQ7L0J3 742 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 GPRC5AQ8NFJ5 357 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 MAP4K1Q92918 833 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 RTP3Q9BQQ7 232 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 PHF7Q9BWX1 381 aaPredicted RBP6.64□□□□□ -1.35
HMGB1-207ENST00000468384 HIPK3Q9H422 1215 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 XPNPEP3Q9NQH7 507 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 FANCMQ8IYD8 2048 aa6.64□□□□□ -1.35
HMGB1-207ENST00000468384 ACLYP53396 1101 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 FLNCQ14315 2725 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 COLEC12Q5KU26 742 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 IL31Q6EBC2 164 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 CD163Q86VB7 1156 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 TXNRD3Q86VQ6 643 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 NLRP10Q86W26 655 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 CCAR1Q8IX12 1150 aaKnown RBP6.63□□□□□ -1.35
HMGB1-207ENST00000468384 FAM126BQ8IXS8 530 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 NUP133Q8WUM0 1156 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 SPIRE2Q8WWL2 714 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 LRIG1Q96JA1 1093 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 ASCC2Q9H1I8 757 aaPredicted RBP6.63□□□□□ -1.35
HMGB1-207ENST00000468384 PORCNQ9H237 461 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 LRBAP50851 2863 aa6.63□□□□□ -1.35
HMGB1-207ENST00000468384 TRIM75PA6NK02 468 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 PYCARD-AS1I3L0S3 204 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 TLR3O15455 904 aaKnown RBP6.62□□□□□ -1.35
HMGB1-207ENST00000468384 PGK1P00558 417 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 PFKMP08237 780 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 HOXC6P09630 235 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 NPR3P17342 541 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 TXKP42681 527 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 RRP1P56182 461 aaKnown RBP6.62□□□□□ -1.35
HMGB1-207ENST00000468384 MTHFSDQ2M296 383 aaKnown RBP6.62□□□□□ -1.35
HMGB1-207ENST00000468384 PROSER1Q86XN7 944 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 DZIP1LQ8IYY4 767 aaKnown RBP6.62□□□□□ -1.35
HMGB1-207ENST00000468384 RETREG2Q8NC44 543 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 IL17REQ8NFR9 667 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 JARID2Q92833 1246 aaPredicted RBP6.62□□□□□ -1.35
HMGB1-207ENST00000468384 UBL7Q96S82 380 aaPredicted RBP6.62□□□□□ -1.35
HMGB1-207ENST00000468384 WNT8AQ9H1J5 351 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 SMOC2Q9H3U7 446 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 TXNRD2Q9NNW7 524 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 INCENPQ9NQS7 918 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 SMG5Q9UPR3 1016 aaKnown RBP6.62□□□□□ -1.35
HMGB1-207ENST00000468384 SORCS3Q9UPU3 1222 aa6.62□□□□□ -1.35
HMGB1-207ENST00000468384 LINC01553A4QN01 128 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 SPTLC1O15269 473 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 TOP3BO95985 862 aaKnown RBP6.61□□□□□ -1.35
HMGB1-207ENST00000468384 CD4P01730 458 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 PTPRAP18433 802 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms