RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 C16orf59Q7L2K0 433 aa24.76■■□□□ 1.55
COL9A3-207ENST00000467819 PLEKHM2Q8IWE5 1019 aa24.76■■□□□ 1.55
COL9A3-207ENST00000467819 SLC43A3Q8NBI5 491 aa24.76■■□□□ 1.55
COL9A3-207ENST00000467819 TTC14Q96N46 770 aa24.76■■□□□ 1.55
COL9A3-207ENST00000467819 ZKSCAN3Q9BRR0 538 aa24.76■■□□□ 1.55
COL9A3-207ENST00000467819 RNF41Q9H4P4 317 aaPredicted RBP24.76■■□□□ 1.55
COL9A3-207ENST00000467819 GBF1Q92538 1859 aa24.76■■□□□ 1.55
COL9A3-207ENST00000467819 TMEM265A0A087WTH1 108 aa24.75■■□□□ 1.55
COL9A3-207ENST00000467819 IGHDP01880 384 aa24.75■■□□□ 1.55
COL9A3-207ENST00000467819 FOSL2P15408 326 aa24.75■■□□□ 1.55
COL9A3-207ENST00000467819 PSMC6P62333 389 aa24.75■■□□□ 1.55
COL9A3-207ENST00000467819 CLEC4DQ8WXI8 215 aa24.75■■□□□ 1.55
COL9A3-207ENST00000467819 ESR2Q92731 530 aa24.75■■□□□ 1.55
COL9A3-207ENST00000467819 Q9Y3F1 56 aa24.75■■□□□ 1.55
COL9A3-207ENST00000467819 PRUNE2Q8WUY3 3088 aa24.75■■□□□ 1.55
COL9A3-207ENST00000467819 CWC27Q6UX04 472 aaKnown RBP24.74■■□□□ 1.55
COL9A3-207ENST00000467819 RNF207Q6ZRF8 634 aa24.74■■□□□ 1.55
COL9A3-207ENST00000467819 GRIN2DO15399 1336 aa24.74■■□□□ 1.55
COL9A3-207ENST00000467819 UMODL1Q5DID0 1318 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 ZNF213O14771 459 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 GOLGA8HP0CJ92 632 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 SNHG28P0DPA3 235 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 NUCB1Q02818 461 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 DUSP28Q4G0W2 176 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 PSRC1Q6PGN9 363 aaPredicted RBP24.73■■□□□ 1.55
COL9A3-207ENST00000467819 ZNF365Q70YC5 407 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 WDR11Q9BZH6 1224 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 HIPK3Q9H422 1215 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 OSBPL3Q9H4L5 887 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 DIAPH3Q9NSV4 1193 aa24.73■■□□□ 1.55
COL9A3-207ENST00000467819 EXOC6Q8TAG9 804 aa24.72■■□□□ 1.55
COL9A3-207ENST00000467819 TRPV6Q9H1D0 765 aa24.72■■□□□ 1.55
COL9A3-207ENST00000467819 CPVLQ9H3G5 476 aa24.72■■□□□ 1.55
COL9A3-207ENST00000467819 PNMA2Q9UL42 364 aa24.72■■□□□ 1.55
COL9A3-207ENST00000467819 WDR19Q8NEZ3 1342 aa24.71■■□□□ 1.55
COL9A3-207ENST00000467819 LOC102724159A0A0B4J2E5 919 aa24.71■■□□□ 1.55
COL9A3-207ENST00000467819 GRXCR1A8MXD5 290 aa24.71■■□□□ 1.55
COL9A3-207ENST00000467819 B4GALT4O60513 344 aa24.71■■□□□ 1.55
COL9A3-207ENST00000467819 RPS6P62753 249 aaKnown RBP24.71■■□□□ 1.55
COL9A3-207ENST00000467819 PWP2Q15269 919 aaKnown RBP24.71■■□□□ 1.55
COL9A3-207ENST00000467819 USH1GQ495M9 461 aa24.71■■□□□ 1.55
COL9A3-207ENST00000467819 TIFAQ96CG3 184 aa24.71■■□□□ 1.55
COL9A3-207ENST00000467819 COL25A1Q9BXS0 654 aaPredicted RBP24.71■■□□□ 1.55
COL9A3-207ENST00000467819 UBA5Q9GZZ9 404 aa24.71■■□□□ 1.55
COL9A3-207ENST00000467819 IL23AQ9NPF7 189 aa24.71■■□□□ 1.55
COL9A3-207ENST00000467819 VCANP13611 3396 aa24.7■■□□□ 1.55
COL9A3-207ENST00000467819 KDM4AO75164 1064 aa24.7■■□□□ 1.54
COL9A3-207ENST00000467819 CCL23P55773 120 aa24.7■■□□□ 1.54
COL9A3-207ENST00000467819 PDE4DQ08499 809 aa24.7■■□□□ 1.54
COL9A3-207ENST00000467819 GRIN2CQ14957 1233 aa24.7■■□□□ 1.54
COL9A3-207ENST00000467819 GPATCH4Q5T3I0 446 aaKnown RBP24.7■■□□□ 1.54
COL9A3-207ENST00000467819 RASIP1Q5U651 963 aa24.7■■□□□ 1.54
COL9A3-207ENST00000467819 OR6J1Q8NGC5 347 aa24.7■■□□□ 1.54
COL9A3-207ENST00000467819 MYL3P08590 195 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 PBX2P40425 430 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 IQCA1Q86XH1 822 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 DGKHQ86XP1 1220 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 PNMA1Q8ND90 353 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 SEZ6LQ9BYH1 1024 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 ZNF576Q9H609 170 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 POLR3EQ9NVU0 708 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 SCN5AQ14524 2016 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 SCN10AQ9Y5Y9 1956 aa24.69■■□□□ 1.54
COL9A3-207ENST00000467819 RBM47A0AV96 593 aaKnown RBP24.68■■□□□ 1.54
COL9A3-207ENST00000467819 B4E1Z4 1266 aa24.68■■□□□ 1.54
COL9A3-207ENST00000467819 MPHOSPH6Q99547 160 aaKnown RBP24.68■■□□□ 1.54
COL9A3-207ENST00000467819 NOC4LQ9BVI4 516 aaKnown RBP24.68■■□□□ 1.54
COL9A3-207ENST00000467819 PBX4Q9BYU1 374 aa24.68■■□□□ 1.54
COL9A3-207ENST00000467819 KAT14Q9H8E8 782 aa24.68■■□□□ 1.54
COL9A3-207ENST00000467819 KIAA1217Q5T5P2 1943 aa24.68■■□□□ 1.54
COL9A3-207ENST00000467819 HIP1O00291 1037 aa24.67■■□□□ 1.54
COL9A3-207ENST00000467819 CPT1AP50416 773 aa24.67■■□□□ 1.54
COL9A3-207ENST00000467819 PPP2R5BQ15173 497 aa24.67■■□□□ 1.54
COL9A3-207ENST00000467819 CDC37Q16543 378 aaPredicted RBP24.67■■□□□ 1.54
COL9A3-207ENST00000467819 DNERQ8NFT8 737 aa24.67■■□□□ 1.54
COL9A3-207ENST00000467819 ALDH8A1Q9H2A2 487 aaPredicted RBP24.67■■□□□ 1.54
COL9A3-207ENST00000467819 FGBP02675 491 aa24.66■■□□□ 1.54
COL9A3-207ENST00000467819 EDNRBP24530 442 aa24.66■■□□□ 1.54
COL9A3-207ENST00000467819 PURAQ00577 322 aaKnown RBP24.66■■□□□ 1.54
COL9A3-207ENST00000467819 CCDC178Q5BJE1 867 aa24.66■■□□□ 1.54
COL9A3-207ENST00000467819 HERVK_113Q902F9 699 aa24.66■■□□□ 1.54
COL9A3-207ENST00000467819 ZSCAN10Q96SZ4 725 aaPredicted RBP24.66■■□□□ 1.54
COL9A3-207ENST00000467819 DSCC1Q9BVC3 393 aa24.66■■□□□ 1.54
COL9A3-207ENST00000467819 WNT8AQ9H1J5 351 aa24.66■■□□□ 1.54
COL9A3-207ENST00000467819 MTIF3Q9H2K0 278 aaKnown RBP24.66■■□□□ 1.54
COL9A3-207ENST00000467819 GPHNQ9NQX3 736 aaPredicted RBP24.66■■□□□ 1.54
COL9A3-207ENST00000467819 CXXC1Q9P0U4 656 aaPredicted RBP24.66■■□□□ 1.54
COL9A3-207ENST00000467819 IMMTQ16891 758 aaKnown RBP24.65■■□□□ 1.54
COL9A3-207ENST00000467819 OTOP2Q7RTS6 562 aa24.65■■□□□ 1.54
COL9A3-207ENST00000467819 SCFD2Q8WU76 684 aa24.65■■□□□ 1.54
COL9A3-207ENST00000467819 COPS5Q92905 334 aa24.65■■□□□ 1.54
COL9A3-207ENST00000467819 SCLYQ96I15 445 aa24.65■■□□□ 1.54
COL9A3-207ENST00000467819 TRMT13Q9NUP7 481 aaKnown RBP24.65■■□□□ 1.54
COL9A3-207ENST00000467819 TNKSO95271 1327 aa24.64■■□□□ 1.54
COL9A3-207ENST00000467819 RAD50Q92878 1312 aa24.64■■□□□ 1.54
COL9A3-207ENST00000467819 NKRFO15226 690 aaKnown RBP eCLIP24.64■■□□□ 1.54
COL9A3-207ENST00000467819 NT5C2P49902 561 aa24.64■■□□□ 1.54
COL9A3-207ENST00000467819 BRDTQ58F21 947 aaPredicted RBP24.64■■□□□ 1.54
COL9A3-207ENST00000467819 ADGRF4Q8IZF3 695 aa24.64■■□□□ 1.54
COL9A3-207ENST00000467819 ENAHQ8N8S7 591 aaPredicted RBP24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms