RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 RPUSD2Q8IZ73 545 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 IVNS1ABPQ9Y6Y0 642 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 TARBP1Q13395 1621 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 HMGB1P1B2RPK0 211 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 NT5C2P49902 561 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 YWHAEP62258 255 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 ARHGEF25Q86VW2 580 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 ALDH1B1P30837 517 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 USP6P35125 1406 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 NNTQ13423 1086 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 TOB2Q14106 344 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 RAB20Q9NX57 234 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 MED14O60244 1454 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 PSMD6Q15008 389 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 TTLL7Q6ZT98 887 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 NHEJ1Q9H9Q4 299 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 LARSQ9P2J5 1176 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 USP21Q9UK80 565 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 TAF12Q16514 161 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 RDH13Q8NBN7 331 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 LARP4BQ92615 738 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 WDR19Q8NEZ3 1342 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 hCG_1984214I3L0E3 225 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 ATF2P15336 505 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 CCNE1P24864 410 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 EIF3BP55884 814 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 ZNF713Q8N859 430 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 ZNF579Q8NAF0 562 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 PSTPIP2Q9H939 334 aa20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 DDX25Q9UHL0 483 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-204ENST00000463837 PRPF3O43395 683 aaKnown RBP20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 IL9RQ01113 521 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 PROSER3Q2NL68 480 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 SDR42E1Q8WUS8 393 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 PGBD1Q96JS3 809 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 ADAM21Q9UKJ8 722 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 FRMD3A2A2Y4 597 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 SLC8A3P57103 927 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 C2orf54Q08AI8 447 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 FLAD1Q8NFF5 587 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 PAGE5Q96GU1 130 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 SEPT2Q15019 361 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 TET3O43151 1660 aa20.77■□□□□ 0.92
CCDC88B-204ENST00000463837 ARID5BQ14865 1188 aa20.77■□□□□ 0.91
CCDC88B-204ENST00000463837 PALM2Q8IXS6 379 aa20.77■□□□□ 0.91
CCDC88B-204ENST00000463837 SOS2Q07890 1332 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 ATP1A3P13637 1013 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 LMNB2Q03252 620 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 SH2D4BQ5SQS7 431 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 ARL6IP4Q66PJ3 421 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 GPKOWQ92917 476 aaPredicted RBP eCLIP20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 MAP7Q14244 749 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 SMYD4Q8IYR2 804 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 DAAM1Q9Y4D1 1078 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 SASH1O94885 1247 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 PEX19P40855 299 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 KCNJ6P48051 423 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 TCP11X2Q5H9J9 407 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 STAG1Q8WVM7 1258 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 MYO1CO00159 1063 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 PDE6CP51160 858 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 CUL1Q13616 776 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 ODF2LQ9ULJ1 636 aa20.76■□□□□ 0.91
CCDC88B-204ENST00000463837 MAP3K15Q6ZN16 1313 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 ANO9A1A5B4 782 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 DDX39AO00148 427 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 ADORA1P30542 326 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 FKBP3Q00688 224 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 PSMD2Q13200 908 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 RILPQ96NA2 401 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 GAS7O60861 476 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 NR1D1P20393 614 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 VPS41P49754 854 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 PTPN12Q05209 780 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 KMT5BQ4FZB7 885 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 TPH2Q8IWU9 490 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 FMR1NBQ8N0W7 255 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 KIF2CQ99661 725 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 MAP3K4Q9Y6R4 1608 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 RPAP1Q9BWH6 1393 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 CYP2J2P51589 502 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 RPS8P62241 208 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 NOD1Q9Y239 953 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 STK36Q9NRP7 1315 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 GEN1Q17RS7 908 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 BANK1Q8NDB2 785 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 LRRC8CQ8TDW0 803 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 RSAD2Q8WXG1 361 aa20.75■□□□□ 0.91
CCDC88B-204ENST00000463837 SERPING1P05155 500 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 PHKA1P46020 1223 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 NAA35Q5VZE5 725 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 GRAMD1CQ8IYS0 662 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 NUF2Q9BZD4 464 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 GPHNQ9NQX3 736 aaPredicted RBP20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 PCDHA13Q9Y5I0 950 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 CCDC117Q8IWD4 279 aaPredicted RBP20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 Q9H521 79 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 UGGT1Q9NYU2 1555 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 BCAMP50895 628 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms