RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SF3B2Q13435 895 aaKnown RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 PFKFB3Q16875 520 aaPredicted RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 TSR1Q2NL82 804 aaKnown RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 TTC31Q49AM3 519 aaPredicted RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 NAALADL2Q58DX5 795 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 FIGNQ5HY92 759 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 VARS2Q5ST30 1063 aaKnown RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 SWT1Q5T5J6 900 aaKnown RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 IQCEQ6IPM2 695 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 PACS2Q86VP3 889 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 IQCA1Q86XH1 822 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 EFCAB13Q8IY85 973 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 ZNF687Q8N1G0 1237 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 FNBP4Q8N3X1 1017 aaPredicted RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 MMGT1Q8N4V1 131 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 SRBD1Q8N5C6 995 aaKnown RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 GIMAP8Q8ND71 665 aaPredicted RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 AENQ8WTP8 325 aaKnown RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 RNF166Q96A37 237 aaPredicted RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 SELENOOQ9BVL4 669 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 DISC1Q9NRI5 854 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 LRP2BPQ9P2M1 347 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 MYH14Q7Z406 1995 aaKnown RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 COL1A1P02452 1464 aaPredicted RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 A0A1W2PQJ5 194 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 RASSF10A6NK89 507 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 PDE2AO00408 941 aaPredicted RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 SRGAP2O75044 1071 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 MYBL2P10244 700 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 PRLRP16471 622 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 MCM7P33993 719 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 IL6STP40189 918 aaPredicted RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 STAT6P42226 847 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 PMS1P54277 932 aaKnown RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 ZBED6P86452 979 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 DNAJC21Q5F1R6 531 aaKnown RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 TTI2Q6NXR4 508 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 TMEM92Q6UXU6 159 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 PIK3AP1Q6ZUJ8 805 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 KIAA1328Q86T90 577 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 AMOTL1Q8IY63 956 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 SGSM3Q96HU1 749 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 DHTKD1Q96HY7 919 aaPredicted RBP9.49□□□□□ -0.89
VPS50-208ENST00000458707 SLC4A9Q96Q91 983 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 LACRTQ9GZZ8 138 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 FAM107BQ9H098 131 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 KBTBD4Q9NVX7 518 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 FAM184BQ9ULE4 1060 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 ZBTB1Q9Y2K1 713 aa9.49□□□□□ -0.89
VPS50-208ENST00000458707 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.49□□□□□ -0.89
VPS50-208ENST00000458707 CCDC189A1A4V9 331 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 RCCD1A6NED2 376 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 SMIM22K7EJ46 135 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 KIF3CO14782 793 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 PSMA7O14818 248 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 ORC4O43929 436 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 CALML3P27482 149 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 EIF5P55010 431 aaKnown RBP9.48□□□□□ -0.89
VPS50-208ENST00000458707 ZSCAN29Q8IWY8 852 aaPredicted RBP9.48□□□□□ -0.89
VPS50-208ENST00000458707 SMARCC1Q92922 1105 aaPredicted RBP9.48□□□□□ -0.89
VPS50-208ENST00000458707 IQCDQ96DY2 449 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 SH3GL2Q99962 352 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 CRACR2AQ9BSW2 395 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 TSGA10Q9BZW7 698 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 CCSER1Q9C0I3 900 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 NHEJ1Q9H9Q4 299 aaPredicted RBP9.48□□□□□ -0.89
VPS50-208ENST00000458707 SH3GLB2Q9NR46 395 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 EXOC1Q9NV70 894 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 GNL3LQ9NVN8 582 aaKnown RBP9.48□□□□□ -0.89
VPS50-208ENST00000458707 MAPK8IP1Q9UQF2 711 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 ROBO1Q9Y6N7 1651 aa9.48□□□□□ -0.89
VPS50-208ENST00000458707 A0A087WUV0 522 aaPredicted RBP9.47□□□□□ -0.89
VPS50-208ENST00000458707 M0R2N6 131 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 HNRNPH3P31942 346 aaKnown RBP9.47□□□□□ -0.89
VPS50-208ENST00000458707 PTGER2P43116 358 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 VAV2P52735 878 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 NLRP5P59047 1200 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 MEX3CQ5U5Q3 659 aaKnown RBP9.47□□□□□ -0.89
VPS50-208ENST00000458707 GPR153Q6NV75 609 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 GBP6Q6ZN66 633 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 DZIP3Q86Y13 1208 aaKnown RBP9.47□□□□□ -0.89
VPS50-208ENST00000458707 CREG2Q8IUH2 290 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 FAM76AQ8TAV0 307 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 ITFG2Q969R8 447 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 CAPZA3Q96KX2 299 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 ERGIC2Q96RQ1 377 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 DUSP9Q99956 384 aaKnown RBP9.47□□□□□ -0.89
VPS50-208ENST00000458707 TUBGCP2Q9BSJ2 902 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 MAGEF1Q9HAY2 307 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 AGPAT5Q9NUQ2 364 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 ZNHIT6Q9NWK9 470 aaKnown RBP9.47□□□□□ -0.89
VPS50-208ENST00000458707 MAGEC2Q9UBF1 373 aaPredicted RBP9.47□□□□□ -0.89
VPS50-208ENST00000458707 SNX12Q9UMY4 172 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 TFR2Q9UP52 801 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 JRKLQ9Y4A0 524 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 NAV1Q8NEY1 1877 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 GOLGA6BA6NDN3 693 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 ADAMTS3O15072 1205 aa9.47□□□□□ -0.89
VPS50-208ENST00000458707 IPO7O95373 1038 aaKnown RBP9.47□□□□□ -0.89
VPS50-208ENST00000458707 LCA5LO95447 670 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms