RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 CYP26C1Q6V0L0 522 aa13.37□□□□□ -0.27
SMPD4-213ENST00000454468 C16orf86Q6ZW13 317 aa13.37□□□□□ -0.27
SMPD4-213ENST00000454468 FNBP4Q8N3X1 1017 aaPredicted RBP13.37□□□□□ -0.27
SMPD4-213ENST00000454468 SMCR8Q8TEV9 937 aaPredicted RBP13.37□□□□□ -0.27
SMPD4-213ENST00000454468 CUL5Q93034 780 aa13.37□□□□□ -0.27
SMPD4-213ENST00000454468 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.37□□□□□ -0.271e-6■■■■■ 118.5
SMPD4-213ENST00000454468 PALM3A6NDB9 673 aaPredicted RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 DDX39AO00148 427 aaKnown RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 PPIP5K2O43314 1243 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 SLC37A4O43826 429 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 ZNF18P17022 549 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CRKP46108 304 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 ICA1Q05084 483 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 ARL6IP4Q66PJ3 421 aaKnown RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CDC42EP5Q6NZY7 148 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 NLGN1Q8N2Q7 840 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CCDC102AQ96A19 550 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 H7C1D1 291 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CTIFO43310 598 aaKnown RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 C21orf2O43822 256 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 ABL1P00519 1130 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 PPARDQ03181 441 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 TBC1D10BQ4KMP7 808 aaPredicted RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 PDXDC2PQ6P474 469 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CCDC84Q86UT8 332 aaPredicted RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CERS5Q8N5B7 392 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 OR8K1Q8NGG5 319 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 FEZ1Q99689 392 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 TSG101Q99816 390 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 E9PMD0 336 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 ZMYND10O75800 440 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CLCN6P51797 869 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CHMP4BP1P59074 171 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 ANKRD40Q6AI12 368 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CERS3Q8IU89 383 aa13.36□□□□□ -0.27
SMPD4-213ENST00000454468 DHX37Q8IY37 1157 aaKnown RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 CTDP1Q9Y5B0 961 aaPredicted RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 EPN1Q9Y6I3 576 aaPredicted RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 XIRP1Q702N8 1843 aaKnown RBP13.36□□□□□ -0.27
SMPD4-213ENST00000454468 COL14A1Q05707 1796 aaKnown RBP13.35□□□□□ -0.27
SMPD4-213ENST00000454468 NPHP3-ACAD11A0A0J9YXS1 232 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 SRGAP2O75044 1071 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 EEF2P13639 858 aaKnown RBP13.35□□□□□ -0.27
SMPD4-213ENST00000454468 ALDH1B1P30837 517 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 PABPC4Q13310 644 aaKnown RBP eCLIP13.35□□□□□ -0.273e-6■□□□□ 9
SMPD4-213ENST00000454468 RRAGAQ7L523 313 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 COL23A1Q86Y22 540 aaPredicted RBP13.35□□□□□ -0.27
SMPD4-213ENST00000454468 TMTC1Q8IUR5 882 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 LARP4BQ92615 738 aaKnown RBP13.35□□□□□ -0.27
SMPD4-213ENST00000454468 COA1Q9GZY4 146 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 AGPAT5Q9NUQ2 364 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 OGFRQ9NZT2 677 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 ADGRG1Q9Y653 693 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 RNF225M0QZC1 329 aaPredicted RBP13.35□□□□□ -0.27
SMPD4-213ENST00000454468 RHBDL3P58872 404 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 PPP4CP60510 307 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 BMS1Q14692 1282 aaKnown RBP13.35□□□□□ -0.27
SMPD4-213ENST00000454468 CNNM4Q6P4Q7 775 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 TNFRSF25Q93038 417 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 P2RX5Q93086 422 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 KIFC2Q96AC6 838 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 NUDT12Q9BQG2 462 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 HOMER2Q9NSB8 354 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 SEPT11Q9NVA2 429 aaKnown RBP13.35□□□□□ -0.27
SMPD4-213ENST00000454468 TCEAL9Q9UHQ7 104 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 FAM237AA0A1B0GTK4 181 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 CPXCR1Q8N123 301 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 GOLGA1Q92805 767 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 CCDC43Q96MW1 224 aaKnown RBP13.35□□□□□ -0.27
SMPD4-213ENST00000454468 ABHD10Q9NUJ1 306 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 HDAC6Q9UBN7 1215 aa13.35□□□□□ -0.27
SMPD4-213ENST00000454468 BICDL2A1A5D9 508 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 SFI1A8K8P3 1242 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 GH2P01242 217 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 DMTNQ08495 405 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 DCAF17Q5H9S7 520 aaPredicted RBP13.34□□□□□ -0.27
SMPD4-213ENST00000454468 CCDC155Q8N6L0 562 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 CSRNP1Q96S65 589 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 TRIM9Q9C026 710 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 ARFGAP3Q9NP61 516 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 SPEF2Q9C093 1822 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 CTAGE15A4D2H0 777 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 CTAGE8P0CG41 777 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 KRT26Q7Z3Y9 468 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 CTAGE6Q86UF2 777 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 CTAGE4Q8IX94 777 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 ANKRD7Q92527 254 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 DDX12PQ92771 950 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 COL4A1P02462 1669 aa13.34□□□□□ -0.27
SMPD4-213ENST00000454468 PDE6BP35913 854 aa13.33□□□□□ -0.27
SMPD4-213ENST00000454468 GPBP1Q86WP2 473 aa13.33□□□□□ -0.27
SMPD4-213ENST00000454468 SH3GLB2Q9NR46 395 aa13.33□□□□□ -0.27
SMPD4-213ENST00000454468 SAMM50Q9Y512 469 aa13.33□□□□□ -0.27
SMPD4-213ENST00000454468 MYH13Q9UKX3 1938 aa13.33□□□□□ -0.27
SMPD4-213ENST00000454468 UBR2Q8IWV8 1755 aa13.33□□□□□ -0.27
SMPD4-213ENST00000454468 POTEB3A0JP26 581 aa13.33□□□□□ -0.28
SMPD4-213ENST00000454468 POTECB2RU33 542 aa13.33□□□□□ -0.28
SMPD4-213ENST00000454468 POLRMTO00411 1230 aaKnown RBP13.33□□□□□ -0.28
SMPD4-213ENST00000454468 E2F4Q16254 413 aa13.33□□□□□ -0.28
SMPD4-213ENST00000454468 QRICH1Q2TAL8 776 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms