RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 NUDT12Q9BQG2 462 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 KBTBD4Q9NVX7 518 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 QSER1Q2KHR3 1735 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 TNS1Q9HBL0 1735 aaKnown RBP13.24□□□□□ -0.29
VTA1-203ENST00000452973 A0A1B0GTH6 734 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 ZBTB7AO95365 584 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 CDKAL1Q5VV42 579 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 RSBN1LQ6PCB5 846 aaPredicted RBP13.24□□□□□ -0.29
VTA1-203ENST00000452973 IGSF22Q8N9C0 903 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 CCDC112Q8NEF3 446 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 SNX29Q8TEQ0 813 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 BAG1Q99933 345 aaPredicted RBP13.24□□□□□ -0.29
VTA1-203ENST00000452973 RWDD2AQ9UIY3 292 aa13.24□□□□□ -0.29
VTA1-203ENST00000452973 A0A1W2PRG0 241 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 FCER1AP12319 257 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 BAG6P46379 1132 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 MCM6Q14566 821 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 KRT31Q15323 416 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 PPFIBP1Q86W92 1011 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 MTMR9Q96QG7 549 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 TMX1Q9H3N1 280 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 SPDYE2BA6NHP3 402 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 KLRC4O43908 158 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 SSBP05455 408 aaKnown RBP eCLIP13.23□□□□□ -0.29
VTA1-203ENST00000452973 SPDYE6P0CI01 402 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 APTXQ7Z2E3 356 aaKnown RBP13.23□□□□□ -0.29
VTA1-203ENST00000452973 TC2NQ8N9U0 490 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 TRIM47Q96LD4 638 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 TRIM9Q9C026 710 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 EXOC1Q9NV70 894 aa13.23□□□□□ -0.29
VTA1-203ENST00000452973 ADD3Q9UEY8 706 aaKnown RBP13.23□□□□□ -0.29
VTA1-203ENST00000452973 KCNJ18B7U540 433 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 IDEP14735 1019 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 RBL2Q08999 1139 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 KCNJ12Q14500 433 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 PPP4R3BQ5MIZ7 849 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 SYT10Q6XYQ8 523 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 NYAP1Q6ZVC0 841 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 RTKN2Q8IZC4 609 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 MKL1Q969V6 931 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 TMEM39BQ9GZU3 492 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 ATF5Q9Y2D1 282 aaPredicted RBP13.22□□□□□ -0.29
VTA1-203ENST00000452973 ENTPD3O75355 529 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 STK4Q13043 487 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 STIM1Q13586 685 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 CT47A1Q5JQC4 288 aaPredicted RBP13.22□□□□□ -0.29
VTA1-203ENST00000452973 CCDC84Q86UT8 332 aaPredicted RBP13.22□□□□□ -0.29
VTA1-203ENST00000452973 ACER1Q8TDN7 264 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 DCAF4Q8WV16 495 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 CTAGE1Q96RT6 745 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 SRRTQ9BXP5 876 aaKnown RBP13.22□□□□□ -0.29
VTA1-203ENST00000452973 SLC39A2Q9NP94 309 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 ZNF70Q9UC06 446 aaPredicted RBP13.22□□□□□ -0.29
VTA1-203ENST00000452973 HDAC9Q9UKV0 1011 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 BMP3P12645 472 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 HOXA13P31271 388 aaPredicted RBP13.22□□□□□ -0.29
VTA1-203ENST00000452973 TBX2Q13207 712 aaPredicted RBP13.22□□□□□ -0.29
VTA1-203ENST00000452973 GRB10Q13322 594 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 KRT79Q5XKE5 535 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 ADSSL1Q8N142 457 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 ANKRD20A12PQ8NF67 263 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 DESI2Q9BSY9 194 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 RAB34Q9BZG1 259 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 PCDHA12Q9UN75 941 aa13.22□□□□□ -0.29
VTA1-203ENST00000452973 PSMA7O14818 248 aa13.21□□□□□ -0.29
VTA1-203ENST00000452973 KCNA3P22001 575 aa13.21□□□□□ -0.29
VTA1-203ENST00000452973 NAA30Q147X3 362 aaPredicted RBP13.21□□□□□ -0.29
VTA1-203ENST00000452973 SV2BQ7L1I2 683 aa13.21□□□□□ -0.29
VTA1-203ENST00000452973 CCDC47Q96A33 483 aaKnown RBP13.21□□□□□ -0.29
VTA1-203ENST00000452973 AKR1B15C9JRZ8 316 aaPredicted RBP13.21□□□□□ -0.3
VTA1-203ENST00000452973 CASP14P31944 242 aa13.21□□□□□ -0.3
VTA1-203ENST00000452973 CLK2P49760 499 aaKnown RBP13.21□□□□□ -0.3
VTA1-203ENST00000452973 MTF1Q14872 753 aa13.21□□□□□ -0.3
VTA1-203ENST00000452973 TCP11X2Q5H9J9 407 aa13.21□□□□□ -0.3
VTA1-203ENST00000452973 PPP1R18Q6NYC8 613 aa13.21□□□□□ -0.3
VTA1-203ENST00000452973 KCNK18Q7Z418 384 aa13.21□□□□□ -0.3
VTA1-203ENST00000452973 KIF18AQ8NI77 898 aa13.21□□□□□ -0.3
VTA1-203ENST00000452973 HAS1Q92839 578 aa13.21□□□□□ -0.3
VTA1-203ENST00000452973 AMNQ9BXJ7 453 aa13.21□□□□□ -0.3
VTA1-203ENST00000452973 PAXBP1Q9Y5B6 917 aa13.21□□□□□ -0.3
VTA1-203ENST00000452973 SHTN1A0MZ66 631 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 RHOBTB3O94955 611 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 ERCC3P19447 782 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 COPB1P53618 953 aaKnown RBP13.2□□□□□ -0.3
VTA1-203ENST00000452973 AMPD3Q01432 767 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 HSP90AA2PQ14568 343 aaPredicted RBP13.2□□□□□ -0.3
VTA1-203ENST00000452973 TOGARAM2Q6ZUX3 1019 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 FBXO11Q86XK2 927 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 NIM1KQ8IY84 436 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 MTMR8Q96EF0 704 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 PNMA5Q96PV4 448 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 ANO3Q9BYT9 981 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 UBXN1Q04323 297 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 RAD51AP2Q09MP3 1159 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 SYDE2Q5VT97 1194 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 FCHSD1Q86WN1 690 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 TMEM139Q8IV31 216 aa13.2□□□□□ -0.3
VTA1-203ENST00000452973 GIMAP8Q8ND71 665 aaPredicted RBP13.2□□□□□ -0.3
VTA1-203ENST00000452973 LARP4BQ92615 738 aaKnown RBP13.2□□□□□ -0.3
VTA1-203ENST00000452973 BLOC1S4Q9NUP1 217 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms