RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZNF212Q9UDV6 495 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 ABCC5O15440 1437 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 ATP10DQ9P241 1426 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 ADCY3O60266 1144 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 RAB15P59190 212 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 BRDTQ58F21 947 aaPredicted RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 ZNF804AQ7Z570 1209 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 CFAP36Q96G28 342 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 CEP19Q96LK0 163 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 ATP6V0A4Q9HBG4 840 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 GFPT2O94808 682 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 NUP107P57740 925 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 IFT88Q13099 833 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 PPWD1Q96BP3 646 aaKnown RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 PPP2R5CQ13362 524 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 TRIM68Q6AZZ1 485 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 DHX58Q96C10 678 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 SYBUQ9NX95 663 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 KLC3Q6P597 504 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 ADAM21Q9UKJ8 722 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 SMG5Q9UPR3 1016 aaKnown RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 SRRM3A6NNA2 597 aaPredicted RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 KRT38O76015 456 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 LCA5Q86VQ0 697 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 CCDC127Q96BQ5 260 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 CMTM5Q96DZ9 223 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 MBD2Q9UBB5 411 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 KARSQ15046 597 aaKnown RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 ST13P5Q8NFI4 369 aaPredicted RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 ARMCX3Q9UH62 379 aaPredicted RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 SESN1Q9Y6P5 492 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 URB2Q14146 1524 aaKnown RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 ZNF839A8K0R7 811 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 GAP43P17677 238 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 LRRC63Q05C16 580 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 RIBC1Q8N443 379 aaPredicted RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 APPBP2Q92624 585 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 NUDT16Q96DE0 195 aaKnown RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 SAMM50Q9Y512 469 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 TNKSO95271 1327 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 ZBED6P86452 979 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 MMEL1Q495T6 779 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 DAB2IPQ5VWQ8 1189 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 ANKRD13DQ6ZTN6 518 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 PRUNE1Q86TP1 453 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 IFNL2Q8IZJ0 200 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 HNRNPLLQ8WVV9 542 aaKnown RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 OLFM1Q99784 485 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 RIOK1Q9BRS2 568 aaKnown RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 FAM192AQ9GZU8 254 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 RNF216Q9NWF9 866 aaPredicted RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 DCDC2Q9UHG0 476 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 CCT5P48643 541 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 ICA1LQ8NDH6 482 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 ENOX1Q8TC92 643 aaKnown RBP7.8□□□□□ -1.16
VPS53-204ENST00000437048 RPS6KC1Q96S38 1066 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 RAB20Q9NX57 234 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 WDR19Q8NEZ3 1342 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 KCNJ18B7U540 433 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 PDE4DQ08499 809 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 KCNJ12Q14500 433 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 CNGA2Q16280 664 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 UBN2Q6ZU65 1347 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 GPC4O75487 556 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 TUBA4AP68366 448 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 DNAL1Q4LDG9 190 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 STX8Q9UNK0 236 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 DNM3Q9UQ16 869 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 BBS5Q8N3I7 341 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 OSBPL3Q9H4L5 887 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 TMEM247A6NEH6 219 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 PRR23AA6NEV1 266 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 LRRIQ3A6PVS8 624 aaPredicted RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 RASSF9O75901 435 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.79□□□□□ -1.16
VPS53-204ENST00000437048 XPO4Q9C0E2 1151 aaKnown RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 SMARCAL1Q9NZC9 954 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 ARL6IP4Q66PJ3 421 aaKnown RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 PDIK1LQ8N165 341 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 SLITRK6Q9H5Y7 841 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 TMEM51Q9NW97 253 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 OLFML3Q9NRN5 406 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 GID8Q9NWU2 228 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 FAM83GA6ND36 823 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 ZNF483Q8TF39 744 aaPredicted RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 SLC38A10Q9HBR0 1119 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 CDR2Q01850 454 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 SFSWAPQ12872 951 aaKnown RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 NCAPH2Q6IBW4 605 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 CXorf38Q8TB03 319 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 MRPS26Q9BYN8 205 aaKnown RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 PALMDQ9NP74 551 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 COL4A3BPQ9Y5P4 624 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 ABLIM1O14639 778 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 CASP8Q14790 479 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 CCDC28BQ9BUN5 200 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 GCOM2Q9BZD3 368 aaPredicted RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 SCHIP1Q9P0W5 487 aaPredicted RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 TMED10P49755 219 aaKnown RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 PRPSAP1Q14558 356 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms