RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ERLIN1O75477 346 aa13.2□□□□□ -0.3
CD44-209ENST00000433892 UFL1O94874 794 aa13.2□□□□□ -0.3
CD44-209ENST00000433892 ATP1A1P05023 1023 aaKnown RBP13.2□□□□□ -0.3
CD44-209ENST00000433892 MEA1Q16626 185 aa13.2□□□□□ -0.3
CD44-209ENST00000433892 HDXQ7Z353 690 aa13.2□□□□□ -0.3
CD44-209ENST00000433892 TRAPPC11Q7Z392 1133 aa13.2□□□□□ -0.3
CD44-209ENST00000433892 KIAA1328Q86T90 577 aa13.2□□□□□ -0.3
CD44-209ENST00000433892 REXO1Q8N1G1 1221 aaKnown RBP13.2□□□□□ -0.3
CD44-209ENST00000433892 NEK11Q8NG66 645 aa13.2□□□□□ -0.3
CD44-209ENST00000433892 NGLY1Q96IV0 654 aa13.2□□□□□ -0.3
CD44-209ENST00000433892 NOC4LQ9BVI4 516 aaKnown RBP13.2□□□□□ -0.3
CD44-209ENST00000433892 L1RE1Q9UN81 338 aa13.2□□□□□ -0.3
CD44-209ENST00000433892 GPR75-ASB3A0A0A6YYF3 556 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 RCCD1A6NED2 376 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 KRT83P78385 493 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 MIIPQ5JXC2 388 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 TRAPPC3LQ5T215 181 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 TAF3Q5VWG9 929 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 KIAA0895Q8NCT3 520 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 LACRTQ9GZZ8 138 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 NHEJ1Q9H9Q4 299 aaPredicted RBP13.19□□□□□ -0.3
CD44-209ENST00000433892 SLC39A2Q9NP94 309 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 ZNHIT6Q9NWK9 470 aaKnown RBP13.19□□□□□ -0.3
CD44-209ENST00000433892 FRMPD2Q68DX3 1309 aaPredicted RBP13.19□□□□□ -0.3
CD44-209ENST00000433892 AMPD3Q01432 767 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 JAKMIP2Q96AA8 810 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 CALML4Q96GE6 196 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 SEMA6BQ9H3T3 888 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 RNF216Q9NWF9 866 aaPredicted RBP13.19□□□□□ -0.3
CD44-209ENST00000433892 DUSP10Q9Y6W6 482 aa13.19□□□□□ -0.3
CD44-209ENST00000433892 CYLC1P35663 651 aaPredicted RBP13.18□□□□□ -0.3
CD44-209ENST00000433892 RHBDL3P58872 404 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 ZBED6P86452 979 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 CYP27A1Q02318 531 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 FAM114A1Q8IWE2 563 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 RPGRQ92834 1020 aaKnown RBP13.18□□□□□ -0.3
CD44-209ENST00000433892 NUP58Q9BVL2 599 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 SAR1BQ9Y6B6 198 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 MYH1P12882 1939 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 DDX60LQ5H9U9 1706 aaKnown RBP13.18□□□□□ -0.3
CD44-209ENST00000433892 KRT86O43790 486 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 N4BP1O75113 896 aaKnown RBP13.18□□□□□ -0.3
CD44-209ENST00000433892 VPS72Q15906 364 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 MFSD14BQ5SR56 506 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 CNNM4Q6P4Q7 775 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 SV2BQ7L1I2 683 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 RETREG2Q8NC44 543 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 COA7Q96BR5 231 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 CAPZA3Q96KX2 299 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 MMS19Q96T76 1030 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 LRWD1Q9UFC0 647 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 ADAM21Q9UKJ8 722 aa13.18□□□□□ -0.3
CD44-209ENST00000433892 MYMKA6NI61 221 aa13.17□□□□□ -0.3
CD44-209ENST00000433892 SLC37A4O43826 429 aa13.17□□□□□ -0.3
CD44-209ENST00000433892 IPO7O95373 1038 aaKnown RBP13.17□□□□□ -0.3
CD44-209ENST00000433892 HNRNPH2P55795 449 aaKnown RBP13.17□□□□□ -0.3
CD44-209ENST00000433892 EIF6P56537 245 aaKnown RBP13.17□□□□□ -0.3
CD44-209ENST00000433892 GRB10Q13322 594 aa13.17□□□□□ -0.3
CD44-209ENST00000433892 CALCRLQ16602 461 aa13.17□□□□□ -0.3
CD44-209ENST00000433892 PRR5LQ6MZQ0 368 aa13.17□□□□□ -0.3
CD44-209ENST00000433892 FAM196AQ6ZSG2 479 aa13.17□□□□□ -0.3
CD44-209ENST00000433892 C15orf52Q6ZUT6 534 aaKnown RBP13.17□□□□□ -0.3
CD44-209ENST00000433892 DYMQ7RTS9 669 aa13.17□□□□□ -0.3
CD44-209ENST00000433892 ZSCAN29Q8IWY8 852 aaPredicted RBP13.17□□□□□ -0.3
CD44-209ENST00000433892 MTMR9Q96QG7 549 aa13.17□□□□□ -0.3
CD44-209ENST00000433892 BTAF1O14981 1849 aa13.17□□□□□ -0.3
CD44-209ENST00000433892 MACROD2A1Z1Q3 448 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 EIF3CLB5ME19 914 aaKnown RBP13.16□□□□□ -0.3
CD44-209ENST00000433892 TDP2O95551 362 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 PLEKP08567 350 aaPredicted RBP13.16□□□□□ -0.3
CD44-209ENST00000433892 PDHBP11177 359 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 IL1R1P14778 569 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 GPS2Q13227 327 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 CASP8Q14790 479 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 FKBP15Q5T1M5 1219 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 CERS3Q8IU89 383 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 CCDC170Q8IYT3 715 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 LRRC47Q8N1G4 583 aaKnown RBP13.16□□□□□ -0.3
CD44-209ENST00000433892 ERGIC2Q96RQ1 377 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 EIF3CQ99613 913 aaKnown RBP13.16□□□□□ -0.3
CD44-209ENST00000433892 BLOC1S4Q9NUP1 217 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 GGA1Q9UJY5 639 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 POTEMA6NI47 508 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 PLCG2P16885 1265 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 ERCC3P19447 782 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 SMARCA1P28370 1054 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 PPP1R2P41236 205 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 PAPD7Q5XG87 772 aaKnown RBP13.16□□□□□ -0.3
CD44-209ENST00000433892 CENPPQ6IPU0 288 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 KRT26Q7Z3Y9 468 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 CLEC10AQ8IUN9 316 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 EHBP1Q8NDI1 1231 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 PNMA5Q96PV4 448 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 GBP3Q9H0R5 595 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 RIOX1Q9H6W3 641 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 CALCOCO1Q9P1Z2 691 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 VPS18Q9P253 973 aa13.16□□□□□ -0.3
CD44-209ENST00000433892 EDIL3O43854 480 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 EIF3JO75822 258 aaKnown RBP13.15□□□□□ -0.3
CD44-209ENST00000433892 PICALMQ13492 652 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms