RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TCP11L1Q9NUJ3 509 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 EYSQ5T1H1 3165 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 GRXCR1A8MXD5 290 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 MYL3P08590 195 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 GOLGA8HP0CJ92 632 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 SDSP20132 328 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 CCL23P55773 120 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 ZNF543Q08ER8 600 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 ZNF365Q70YC5 407 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 OR6J1Q8NGC5 347 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 ESR2Q92731 530 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 WDR11Q9BZH6 1224 aa17.04■□□□□ 0.32
SDC1-204ENST00000429035 RWDD1Q9H446 243 aaPredicted RBP17.04■□□□□ 0.32
SDC1-204ENST00000429035 SCN5AQ14524 2016 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 ZNF213O14771 459 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 B4GALT4O60513 344 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 CD4P01730 458 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 PBX2P40425 430 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 NKX3-2P78367 333 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 PDE4DQ08499 809 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 GRIN2CQ14957 1233 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 FAM47CQ5HY64 1035 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 CWC27Q6UX04 472 aaKnown RBP17.03■□□□□ 0.32
SDC1-204ENST00000429035 CHD1LQ86WJ1 897 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 MPHOSPH6Q99547 160 aaKnown RBP17.03■□□□□ 0.32
SDC1-204ENST00000429035 TRPV6Q9H1D0 765 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 MTIF3Q9H2K0 278 aaKnown RBP17.03■□□□□ 0.32
SDC1-204ENST00000429035 CPVLQ9H3G5 476 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 ZNF576Q9H609 170 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 IL23AQ9NPF7 189 aa17.03■□□□□ 0.32
SDC1-204ENST00000429035 TANC1Q9C0D5 1861 aa17.02■□□□□ 0.32
SDC1-204ENST00000429035 DHX16O60231 1041 aaKnown RBP17.02■□□□□ 0.32
SDC1-204ENST00000429035 PCP11498 1178 aaKnown RBP17.02■□□□□ 0.32
SDC1-204ENST00000429035 PPP2R5BQ15173 497 aa17.02■□□□□ 0.32
SDC1-204ENST00000429035 DUSP28Q4G0W2 176 aa17.02■□□□□ 0.32
SDC1-204ENST00000429035 C16orf59Q7L2K0 433 aa17.02■□□□□ 0.32
SDC1-204ENST00000429035 MORC4Q8TE76 937 aa17.02■□□□□ 0.32
SDC1-204ENST00000429035 CLEC4DQ8WXI8 215 aa17.02■□□□□ 0.32
SDC1-204ENST00000429035 PBX4Q9BYU1 374 aa17.02■□□□□ 0.32
SDC1-204ENST00000429035 UBA5Q9GZZ9 404 aa17.02■□□□□ 0.32
SDC1-204ENST00000429035 GPHNQ9NQX3 736 aaPredicted RBP17.02■□□□□ 0.32
SDC1-204ENST00000429035 GRIN2DO15399 1336 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 WDR19Q8NEZ3 1342 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 RAD50Q92878 1312 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 ZBBXA8MT70 800 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 KDM4AO75164 1064 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 CPT1AP50416 773 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 CHMP4BP1P59074 171 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 RPS6P62753 249 aaKnown RBP17.01■□□□□ 0.31
SDC1-204ENST00000429035 OTOP2Q7RTS6 562 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 IQCA1Q86XH1 822 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 PLEKHM2Q8IWE5 1019 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 SMC5Q8IY18 1101 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 SLC43A3Q8NBI5 491 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 PPP1R13LQ8WUF5 828 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 TTC14Q96N46 770 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 GAS2L1Q99501 681 aaPredicted RBP17.01■□□□□ 0.31
SDC1-204ENST00000429035 KAT14Q9H8E8 782 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 POLR3EQ9NVU0 708 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 PNMA2Q9UL42 364 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 Q9Y3F1 56 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 A0A0C4DFX4 3053 aa17.01■□□□□ 0.31
SDC1-204ENST00000429035 SCN10AQ9Y5Y9 1956 aa17■□□□□ 0.31
SDC1-204ENST00000429035 B4E1Z4 1266 aa17■□□□□ 0.31
SDC1-204ENST00000429035 CDC37Q16543 378 aaPredicted RBP17■□□□□ 0.31
SDC1-204ENST00000429035 GPATCH4Q5T3I0 446 aaKnown RBP17■□□□□ 0.31
SDC1-204ENST00000429035 TICAM2Q86XR7 235 aa17■□□□□ 0.31
SDC1-204ENST00000429035 PNMA1Q8ND90 353 aa17■□□□□ 0.31
SDC1-204ENST00000429035 PPM1EQ8WY54 764 aa17■□□□□ 0.31
SDC1-204ENST00000429035 COPS5Q92905 334 aa17■□□□□ 0.31
SDC1-204ENST00000429035 SCLYQ96I15 445 aa17■□□□□ 0.31
SDC1-204ENST00000429035 NOC4LQ9BVI4 516 aaKnown RBP17■□□□□ 0.31
SDC1-204ENST00000429035 TRMT13Q9NUP7 481 aaKnown RBP17■□□□□ 0.31
SDC1-204ENST00000429035 MSRAQ9UJ68 235 aa17■□□□□ 0.31
SDC1-204ENST00000429035 KIAA1217Q5T5P2 1943 aa17■□□□□ 0.31
SDC1-204ENST00000429035 IGHDP01880 384 aa16.99■□□□□ 0.31
SDC1-204ENST00000429035 FGBP02675 491 aa16.99■□□□□ 0.31
SDC1-204ENST00000429035 SNHG28P0DPA3 235 aa16.99■□□□□ 0.31
SDC1-204ENST00000429035 CYP2C9P11712 490 aa16.99■□□□□ 0.31
SDC1-204ENST00000429035 BRDTQ58F21 947 aaPredicted RBP16.99■□□□□ 0.31
SDC1-204ENST00000429035 EXOC6Q8TAG9 804 aa16.99■□□□□ 0.31
SDC1-204ENST00000429035 WNT8AQ9H1J5 351 aa16.99■□□□□ 0.31
SDC1-204ENST00000429035 ALDH8A1Q9H2A2 487 aaPredicted RBP16.99■□□□□ 0.31
SDC1-204ENST00000429035 NKX2-4Q9H2Z4 354 aa16.99■□□□□ 0.31
SDC1-204ENST00000429035 PRDM12Q9H4Q4 367 aa16.99■□□□□ 0.31
SDC1-204ENST00000429035 CXXC1Q9P0U4 656 aaPredicted RBP16.99■□□□□ 0.31
SDC1-204ENST00000429035 TNKSO95271 1327 aa16.98■□□□□ 0.31
SDC1-204ENST00000429035 LOC102724159A0A0B4J2E5 919 aa16.98■□□□□ 0.31
SDC1-204ENST00000429035 HIP1O00291 1037 aa16.98■□□□□ 0.31
SDC1-204ENST00000429035 PURAQ00577 322 aaKnown RBP16.98■□□□□ 0.31
SDC1-204ENST00000429035 NUCB1Q02818 461 aa16.98■□□□□ 0.31
SDC1-204ENST00000429035 AAMPQ13685 434 aa16.98■□□□□ 0.31
SDC1-204ENST00000429035 PWP2Q15269 919 aaKnown RBP16.98■□□□□ 0.31
SDC1-204ENST00000429035 RAB30Q15771 203 aa16.98■□□□□ 0.31
SDC1-204ENST00000429035 IMMTQ16891 758 aaKnown RBP16.98■□□□□ 0.31
SDC1-204ENST00000429035 USP38Q8NB14 1042 aa16.98■□□□□ 0.31
SDC1-204ENST00000429035 SCFD2Q8WU76 684 aa16.98■□□□□ 0.31
SDC1-204ENST00000429035 HERVK_113Q902F9 699 aa16.98■□□□□ 0.31
SDC1-204ENST00000429035 MTG1Q9BT17 334 aaPredicted RBP16.98■□□□□ 0.31
SDC1-204ENST00000429035 SEZ6LQ9BYH1 1024 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms