RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 NECTIN1Q15223 517 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 ABCB5Q2M3G0 1257 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 ZNF589Q86UQ0 364 aaPredicted RBP10.86□□□□□ -0.67
USP54-205ENST00000424265 MRIQ9BWK5 157 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 PHLPP2Q6ZVD8 1323 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 LRRD1A4D1F6 860 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 TCP10L2B9ZVM9 353 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 hCG_1984214I3L0E3 225 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 LIFRP42702 1097 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 USP4Q13107 963 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 SLC5A9Q2M3M2 681 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 GPATCH4Q5T3I0 446 aaKnown RBP10.86□□□□□ -0.67
USP54-205ENST00000424265 NYAP1Q6ZVC0 841 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 HOOK3Q86VS8 718 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 PARP9Q8IXQ6 854 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 SYCP3Q8IZU3 236 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 ZNF713Q8N859 430 aaPredicted RBP10.86□□□□□ -0.67
USP54-205ENST00000424265 KAT2BQ92831 832 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 TRIM7Q9C029 511 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 UBAP1Q9NZ09 502 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 FMNL1O95466 1100 aaPredicted RBP10.85□□□□□ -0.67
USP54-205ENST00000424265 DYNLL1P63167 89 aaKnown RBP10.85□□□□□ -0.67
USP54-205ENST00000424265 IQCB1Q15051 598 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 DIXDC1Q155Q3 683 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 SLC4A8Q2Y0W8 1093 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 PROM2Q8N271 834 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 GPR101Q96P66 508 aaPredicted RBP10.85□□□□□ -0.67
USP54-205ENST00000424265 ATP6V0A4Q9HBG4 840 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 UTP6Q9NYH9 597 aaKnown RBP10.85□□□□□ -0.67
USP54-205ENST00000424265 ZMAT2Q96NC0 199 aaKnown RBP10.85□□□□□ -0.67
USP54-205ENST00000424265 POLLQ9UGP5 575 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 SAMM50Q9Y512 469 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 H3BQF6 201 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 AHCYL1O43865 530 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 IREB2P48200 963 aaKnown RBP10.85□□□□□ -0.67
USP54-205ENST00000424265 KIF4BQ2VIQ3 1234 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 MAP7D1Q3KQU3 841 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 ASPRV1Q53RT3 343 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 DGKHQ86XP1 1220 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 DDX27Q96GQ7 796 aaKnown RBP10.85□□□□□ -0.67
USP54-205ENST00000424265 KLRG2A4D1S0 409 aaPredicted RBP10.85□□□□□ -0.67
USP54-205ENST00000424265 SMAPO00193 183 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 SLC1A4P43007 532 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 ME1P48163 572 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 ETF1P62495 437 aaKnown RBP10.85□□□□□ -0.67
USP54-205ENST00000424265 GALNT17Q6IS24 598 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 TRIML1Q8N9V2 468 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 TRAIPQ9BWF2 469 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 CAPS2Q9BXY5 557 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 LRRC2Q9BYS8 371 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 ITGB4P16144 1822 aa10.85□□□□□ -0.67
USP54-205ENST00000424265 GPR75-ASB3A0A0A6YYF3 556 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 PTPDC1A2A3K4 754 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 A6NNZ2 444 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 ORC4O43929 436 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 RTN3O95197 1032 aaPredicted RBP10.84□□□□□ -0.67
USP54-205ENST00000424265 TUBBP07437 444 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 CYP21A2P08686 494 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 ZSCAN22P10073 491 aaPredicted RBP10.84□□□□□ -0.67
USP54-205ENST00000424265 NAPAP54920 295 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 GNGT1P63211 74 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 SLMAPQ14BN4 828 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 TUBB8Q3ZCM7 444 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 EAPPQ56P03 285 aaPredicted RBP10.84□□□□□ -0.67
USP54-205ENST00000424265 C16orf87Q6PH81 154 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 ZNF654Q8IZM8 581 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 PLEKHG4BQ96PX9 1271 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 ALS2CR12Q96Q35 445 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 DNAJC25Q9H1X3 360 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 ALDH8A1Q9H2A2 487 aaPredicted RBP10.84□□□□□ -0.67
USP54-205ENST00000424265 BTAF1O14981 1849 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 PFKFB2O60825 505 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 THEMIS2Q5TEJ8 643 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 OLFML1Q6UWY5 402 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 TMEM179Q6ZVK1 233 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 C3orf67Q6ZVT6 689 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 TNKSO95271 1327 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 SASH3O75995 380 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 TTLL1O95922 423 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 SCARF1Q14162 830 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 DCP1AQ9NPI6 582 aaPredicted RBP10.84□□□□□ -0.67
USP54-205ENST00000424265 DDX19AQ9NUU7 478 aaKnown RBP10.84□□□□□ -0.67
USP54-205ENST00000424265 BAIAP2L1Q9UHR4 511 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 PAIP2BQ9ULR5 123 aaKnown RBP10.84□□□□□ -0.67
USP54-205ENST00000424265 ZBED4O75132 1171 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 CHMP4BP1P59074 171 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 SDF4Q9BRK5 362 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 BMP2KQ9NSY1 1161 aaPredicted RBP10.84□□□□□ -0.67
USP54-205ENST00000424265 TPCN1Q9ULQ1 816 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 DAGLAQ9Y4D2 1042 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 ARFGEF2Q9Y6D5 1785 aa10.84□□□□□ -0.67
USP54-205ENST00000424265 SNAP23O00161 211 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 MYL1P05976 194 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 ZNF341Q9BYN7 854 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 L2HGDHQ9H9P8 463 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 PAPOLBQ9NRJ5 636 aaKnown RBP10.83□□□□□ -0.68
USP54-205ENST00000424265 ASNSP08243 561 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 KRT2P35908 639 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 WDR78Q5VTH9 848 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 SMARCC2Q8TAQ2 1214 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms