RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 ADCY7P51828 1080 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 CNTN2Q02246 1040 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 ARHGEF6Q15052 776 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 UBE2SQ16763 222 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 FAM133AQ8N9E0 248 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 CCDC148Q8NFR7 591 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 SYTL5Q8TDW5 730 aaPredicted RBP13.92□□□□□ -0.18
LINC00539-202ENST00000423575 CCDC12Q8WUD4 166 aaPredicted RBP13.92□□□□□ -0.18
LINC00539-202ENST00000423575 INTS4Q96HW7 963 aaKnown RBP13.92□□□□□ -0.18
LINC00539-202ENST00000423575 PURBQ96QR8 312 aaKnown RBP13.92□□□□□ -0.18
LINC00539-202ENST00000423575 PSTPIP2Q9H939 334 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 SH3GLB2Q9NR46 395 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 FOXD4L1Q9NU39 408 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 COL20A1Q9P218 1284 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 SMC3Q9UQE7 1217 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.92□□□□□ -0.18
LINC00539-202ENST00000423575 HTTP42858 3142 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 MYH6P13533 1939 aa13.92□□□□□ -0.18
LINC00539-202ENST00000423575 ASTN1O14525 1302 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 SMCO2A6NFE2 343 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 POTEB2H3BUK9 544 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 GCOM1H8Y6P7 765 aaPredicted RBP13.91□□□□□ -0.18
LINC00539-202ENST00000423575 MEIS2O14770 477 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 HOXC6P09630 235 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 POLR2MP0CAP2 368 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 CYP2B6P20813 491 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 HOXD10P28358 340 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 RGS2P41220 211 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 NPY5RQ15761 445 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 ZNF792Q3KQV3 632 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 USP17L6PQ6QN14 398 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 FAM184AQ8NB25 1140 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 NPLOC4Q8TAT6 608 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 CUL5Q93034 780 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 APBA2Q99767 749 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 PHF20Q9BVI0 1012 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 MAF1Q9H063 256 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 ZMYND12Q9H0C1 365 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 RIC8AQ9NPQ8 531 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 PRDM10Q9NQV6 1147 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 KCNJ14Q9UNX9 436 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 PLXNB2O15031 1838 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 CASP8AP2Q9UKL3 1982 aa13.91□□□□□ -0.18
LINC00539-202ENST00000423575 SOWAHBA6NEL2 793 aa13.9□□□□□ -0.18
LINC00539-202ENST00000423575 PIK3CDO00329 1044 aa13.9□□□□□ -0.18
LINC00539-202ENST00000423575 NLRP5P59047 1200 aa13.9□□□□□ -0.18
LINC00539-202ENST00000423575 KRT40Q6A162 431 aa13.9□□□□□ -0.18
LINC00539-202ENST00000423575 CTU1Q7Z7A3 348 aaKnown RBP13.9□□□□□ -0.18
LINC00539-202ENST00000423575 DPP9Q86TI2 863 aa13.9□□□□□ -0.18
LINC00539-202ENST00000423575 FAM177A1Q8N128 213 aaPredicted RBP13.9□□□□□ -0.18
LINC00539-202ENST00000423575 SAMD3Q8N6K7 520 aa13.9□□□□□ -0.18
LINC00539-202ENST00000423575 C6orf50Q9HD87 102 aa13.9□□□□□ -0.18
LINC00539-202ENST00000423575 MGAMO43451 1857 aa13.9□□□□□ -0.18
LINC00539-202ENST00000423575 DOCK3Q8IZD9 2030 aa13.9□□□□□ -0.18
LINC00539-202ENST00000423575 XBP1P17861 261 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 MRPL12P52815 198 aaKnown RBP13.89□□□□□ -0.19
LINC00539-202ENST00000423575 PRMT2P55345 433 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 GUCY1B3Q02153 619 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 IRF5Q13568 498 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 BECN1Q14457 450 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 CCL14Q16627 93 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 FCHSD1Q86WN1 690 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 DAGLBQ8NCG7 672 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 RASGRP4Q8TDF6 673 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 C8orf76Q96K31 380 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 TAAR1Q96RJ0 339 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 GLT8D2Q9H1C3 349 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 TMEM260Q9NX78 707 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 MAP3K20Q9NYL2 800 aaKnown RBP13.89□□□□□ -0.19
LINC00539-202ENST00000423575 FLRT1Q9NZU1 646 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 PCDHA4Q9UN74 947 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 DIS3Q9Y2L1 958 aaKnown RBP13.89□□□□□ -0.19
LINC00539-202ENST00000423575 KIF3AQ9Y496 699 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 PTCH2Q9Y6C5 1203 aa13.89□□□□□ -0.19
LINC00539-202ENST00000423575 DDX49Q9Y6V7 483 aaKnown RBP13.89□□□□□ -0.19
LINC00539-202ENST00000423575 RBBP6Q7Z6E9 1792 aaKnown RBP13.88□□□□□ -0.19
LINC00539-202ENST00000423575 IGHA2P01877 340 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 XRCC5P13010 732 aaKnown RBP13.88□□□□□ -0.19
LINC00539-202ENST00000423575 GNA11P29992 359 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 CLK2P49760 499 aaKnown RBP13.88□□□□□ -0.19
LINC00539-202ENST00000423575 ALDH5A1P51649 535 aaPredicted RBP13.88□□□□□ -0.19
LINC00539-202ENST00000423575 TRIM29Q14134 588 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 TEX2Q8IWB9 1127 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 REXO1Q8N1G1 1221 aaKnown RBP13.88□□□□□ -0.19
LINC00539-202ENST00000423575 SPRYD3Q8NCJ5 442 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 RAET1EQ8TD07 263 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 OXER1Q8TDS5 423 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 TRIB2Q92519 343 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 MAML3Q96JK9 1138 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 PGBD1Q96JS3 809 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 BIN2Q9UBW5 565 aaPredicted RBP13.88□□□□□ -0.19
LINC00539-202ENST00000423575 PTPN22Q9Y2R2 807 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 LCTP09848 1927 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 RPTORQ8N122 1335 aa13.88□□□□□ -0.19
LINC00539-202ENST00000423575 M0R2N6 131 aa13.87□□□□□ -0.19
LINC00539-202ENST00000423575 MMP1P03956 469 aa13.87□□□□□ -0.19
LINC00539-202ENST00000423575 HSP90AA1P07900 732 aaKnown RBP13.87□□□□□ -0.19
LINC00539-202ENST00000423575 ELNP15502 786 aa13.87□□□□□ -0.19
LINC00539-202ENST00000423575 EIF2AK2P19525 551 aaKnown RBP13.87□□□□□ -0.19
LINC00539-202ENST00000423575 ANP32AP39687 249 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms