RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ZNF713Q8N859 430 aaPredicted RBP12.27□□□□□ -0.45
LIMS1-207ENST00000422797 C1orf131Q8NDD1 294 aaKnown RBP12.27□□□□□ -0.45
LIMS1-207ENST00000422797 PCMTD1Q96MG8 357 aaPredicted RBP12.27□□□□□ -0.45
LIMS1-207ENST00000422797 TRERF1Q96PN7 1200 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 RUFY1Q96T51 708 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 DUSP9Q99956 384 aaKnown RBP12.27□□□□□ -0.45
LIMS1-207ENST00000422797 SH2D4AQ9H788 454 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 ZNF287Q9HBT7 754 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 DCP1AQ9NPI6 582 aaPredicted RBP12.27□□□□□ -0.45
LIMS1-207ENST00000422797 JADE2Q9NQC1 790 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 STK17AQ9UEE5 414 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 COL1A1P02452 1464 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-207ENST00000422797 hCG_1642624A0A1W2PR95 340 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 SRRM3A6NNA2 597 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-207ENST00000422797 EXOC5O00471 708 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 ABL1P00519 1130 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 OR52Z1P0C646 297 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 USP8P40818 1118 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 LRRC63Q05C16 580 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 CCDC96Q2M329 555 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 FBXO33Q7Z6M2 555 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 IPO4Q8TEX9 1081 aaKnown RBP12.26□□□□□ -0.45
LIMS1-207ENST00000422797 NSUN4Q96CB9 384 aaKnown RBP12.26□□□□□ -0.45
LIMS1-207ENST00000422797 CALML4Q96GE6 196 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 SH3GL2Q99962 352 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 IFIH1Q9BYX4 1025 aaKnown RBP12.26□□□□□ -0.45
LIMS1-207ENST00000422797 TRIM9Q9C026 710 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 ANKRD2Q9GZV1 360 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 BARHL2Q9NY43 387 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 TRIM10Q9UDY6 481 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 LCMT1Q9UIC8 334 aa12.26□□□□□ -0.45
LIMS1-207ENST00000422797 WNK3Q9BYP7 1800 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 SSU72P8A0A1W2PR75 194 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 TRIM49BA6NDI0 452 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 EBAG9O00559 213 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 ENC1O14682 589 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 HSF2BPO75031 334 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 PHACTR2O75167 634 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 GNA11P29992 359 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 GGCXP38435 758 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 DYNLL1P63167 89 aaKnown RBP12.25□□□□□ -0.45
LIMS1-207ENST00000422797 SKOR1P84550 965 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 PDE4DQ08499 809 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 PSMD2Q13200 908 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 SEPT2Q15019 361 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 MAN2A1Q16706 1144 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 CCDC181Q5TID7 509 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 CENPPQ6IPU0 288 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 INTS5Q6P9B9 1019 aaKnown RBP12.25□□□□□ -0.45
LIMS1-207ENST00000422797 PROM2Q8N271 834 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 EIF1ADQ8N9N8 165 aaKnown RBP12.25□□□□□ -0.45
LIMS1-207ENST00000422797 PNMA1Q8ND90 353 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 SYN2Q92777 582 aaPredicted RBP12.25□□□□□ -0.45
LIMS1-207ENST00000422797 SPZ1Q9BXG8 430 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 SLAIN2Q9P270 581 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 HDAC6Q9UBN7 1215 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 PCDHA6Q9UN73 950 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 NIP7Q9Y221 180 aaKnown RBP eCLIP12.25□□□□□ -0.45
LIMS1-207ENST00000422797 PCDHA8Q9Y5H6 950 aa12.25□□□□□ -0.45
LIMS1-207ENST00000422797 FLT1P17948 1338 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 GRID2IPA4D2P6 1211 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 TRIM66O15016 1216 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 SLC26A4O43511 780 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 ZEB2O60315 1214 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 NOP2P46087 812 aaKnown RBP12.24□□□□□ -0.45
LIMS1-207ENST00000422797 ASIC1P78348 528 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 NONOQ15233 471 aaKnown RBP eCLIP12.24□□□□□ -0.45
LIMS1-207ENST00000422797 VWA3BQ502W6 1294 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 RCSD1Q6JBY9 416 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 SAMD1Q6SPF0 538 aaPredicted RBP12.24□□□□□ -0.45
LIMS1-207ENST00000422797 B4GALNT4Q76KP1 1039 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 TADA2BQ86TJ2 420 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 CREG2Q8IUH2 290 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 GUF1Q8N442 669 aaKnown RBP12.24□□□□□ -0.45
LIMS1-207ENST00000422797 CAPZA3Q96KX2 299 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 TSG101Q99816 390 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 CAPS2Q9BXY5 557 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 RAB34Q9BZG1 259 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 LACRTQ9GZZ8 138 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 DEF6Q9H4E7 631 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 YY1AP1Q9H869 796 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 C6orf50Q9HD87 102 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 RIC8AQ9NPQ8 531 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 STIM2Q9P246 746 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 PCDHA13Q9Y5I0 950 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 FAM205AQ6ZU69 1335 aa12.24□□□□□ -0.45
LIMS1-207ENST00000422797 ESYT2A0FGR8 921 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 SNAP23O00161 211 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 STXBP3O00186 592 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 EIF3HO15372 352 aaKnown RBP eCLIP12.23□□□□□ -0.45
LIMS1-207ENST00000422797 PLCG1P19174 1290 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 CRKLP46109 303 aaKnown RBP12.23□□□□□ -0.45
LIMS1-207ENST00000422797 GYG1P46976 350 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 KIF11P52732 1056 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 PMS1P54277 932 aaKnown RBP12.23□□□□□ -0.45
LIMS1-207ENST00000422797 GSTO1P78417 241 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 PAK2Q13177 524 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 CFAP221Q4G0U5 840 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 MIIPQ5JXC2 388 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 ICE2Q659A1 982 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms