RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PCDHB6Q9Y5E3 794 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 A0A0G2JMZ2 1700 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 CLK2P49760 499 aaKnown RBP19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 ZNF174Q15697 407 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 LETM2Q2VYF4 491 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 TKFCQ3LXA3 575 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 TRERF1Q96PN7 1200 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 ANO3Q9BYT9 981 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 RNF146Q9NTX7 359 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 ABT1Q9ULW3 272 aaKnown RBP19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 ADAMTS5Q9UNA0 930 aa19.51■□□□□ 0.71
CCDC28B-202ENST00000421922 MYH7BA7E2Y1 1941 aa19.5■□□□□ 0.71
CCDC28B-202ENST00000421922 PIK3CDO00329 1044 aa19.5■□□□□ 0.71
CCDC28B-202ENST00000421922 PPP6R2O75170 966 aa19.5■□□□□ 0.71
CCDC28B-202ENST00000421922 MCM7P33993 719 aa19.5■□□□□ 0.71
CCDC28B-202ENST00000421922 RGMBQ6NW40 437 aa19.5■□□□□ 0.71
CCDC28B-202ENST00000421922 GTF3C2Q8WUA4 911 aaPredicted RBP19.5■□□□□ 0.71
CCDC28B-202ENST00000421922 PAGR1Q9BTK6 254 aa19.5■□□□□ 0.71
CCDC28B-202ENST00000421922 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.5■□□□□ 0.71
CCDC28B-202ENST00000421922 MEIS2O14770 477 aa19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 ATP2A1O14983 1001 aa19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 CCNT1O60563 726 aaKnown RBP19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 GADD45BO75293 160 aaPredicted RBP19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 HOXA13P31271 388 aaPredicted RBP19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 STAT3P40763 770 aa19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 HERVK_113P62684 666 aa19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 ORC2Q13416 577 aaPredicted RBP19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 TMEM132BQ14DG7 1078 aa19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 FCHSD1Q86WN1 690 aa19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 SAMD3Q8N6K7 520 aa19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 P2RX7Q99572 595 aaKnown RBP19.49■□□□□ 0.71
CCDC28B-202ENST00000421922 MARCKSP29966 332 aaPredicted RBP19.48■□□□□ 0.71
CCDC28B-202ENST00000421922 PTPAQ15257 358 aa19.48■□□□□ 0.71
CCDC28B-202ENST00000421922 SAPCD2Q86UD0 394 aa19.48■□□□□ 0.71
CCDC28B-202ENST00000421922 RASAL3Q86YV0 1011 aa19.48■□□□□ 0.71
CCDC28B-202ENST00000421922 KRI1Q8N9T8 703 aaKnown RBP19.48■□□□□ 0.71
CCDC28B-202ENST00000421922 REPS2Q8NFH8 660 aa19.48■□□□□ 0.71
CCDC28B-202ENST00000421922 SMCR8Q8TEV9 937 aaPredicted RBP19.48■□□□□ 0.71
CCDC28B-202ENST00000421922 ACAD9Q9H845 621 aa19.48■□□□□ 0.71
CCDC28B-202ENST00000421922 SLC45A1Q9Y2W3 748 aa19.48■□□□□ 0.71
CCDC28B-202ENST00000421922 TMEM88BA6NKF7 163 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 NFIBO00712 420 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 OPLAHO14841 1288 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 MOGSQ13724 837 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 KLHL40Q2TBA0 621 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 GPAT2Q6NUI2 795 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 NSMFQ6X4W1 530 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 LBX2Q6XYB7 198 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 CCDC73Q6ZRK6 1079 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 ANKRD23Q86SG2 305 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 SYAP1Q96A49 352 aaPredicted RBP19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 MAP3K20Q9NYL2 800 aaKnown RBP19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 ZNF214Q9UL59 606 aaPredicted RBP19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 PCDHA7Q9UN72 937 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 TLL2Q9Y6L7 1015 aa19.47■□□□□ 0.71
CCDC28B-202ENST00000421922 MANSC4A6NHS7 340 aaPredicted RBP19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 PDHXO00330 501 aa19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 NEMFO60524 1076 aa19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 CUTAO60888 179 aa19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 GCFC2P16383 781 aaKnown RBP19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 COPB2P35606 906 aa19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 PAXIP1Q6ZW49 1069 aaPredicted RBP19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 BRI3BPQ8WY22 251 aa19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 FERMT2Q96AC1 680 aa19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 MS4A4AQ96JQ5 239 aa19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 ANP32EQ9BTT0 268 aa19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 FBXO40Q9UH90 709 aa19.46■□□□□ 0.71
CCDC28B-202ENST00000421922 LAD1O00515 517 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 MARCH6O60337 910 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 ZNF76P36508 570 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 HSD17B4P51659 736 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 PTGDRQ13258 359 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 MUM1L1Q5H9M0 696 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 ADALQ6DHV7 355 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 RNF207Q6ZRF8 634 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 CHST13Q8NET6 341 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 CLEC4DQ8WXI8 215 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 MRPS27Q92552 414 aaKnown RBP19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 CCDC102AQ96A19 550 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 PARK7Q99497 189 aaKnown RBP19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 SPATC1LQ9H0A9 340 aa19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 MORC2Q9Y6X9 1032 aaPredicted RBP19.45■□□□□ 0.7
CCDC28B-202ENST00000421922 BTBD19C9JJ37 291 aa19.44■□□□□ 0.7
CCDC28B-202ENST00000421922 USP11P51784 963 aa19.44■□□□□ 0.7
CCDC28B-202ENST00000421922 ARHGAP4P98171 946 aa19.44■□□□□ 0.7
CCDC28B-202ENST00000421922 ATP2C1P98194 919 aaPredicted RBP19.44■□□□□ 0.7
CCDC28B-202ENST00000421922 CCAR1Q8IX12 1150 aaKnown RBP19.44■□□□□ 0.7
CCDC28B-202ENST00000421922 FSIP1Q8NA03 581 aa19.44■□□□□ 0.7
CCDC28B-202ENST00000421922 GPT2Q8TD30 523 aa19.44■□□□□ 0.7
CCDC28B-202ENST00000421922 RABGAP1Q9Y3P9 1069 aa19.44■□□□□ 0.7
CCDC28B-202ENST00000421922 A0A1W2PQ27 194 aa19.43■□□□□ 0.7
CCDC28B-202ENST00000421922 A0A1W2PQ64 194 aa19.43■□□□□ 0.7
CCDC28B-202ENST00000421922 A0A1W2PQD8 194 aa19.43■□□□□ 0.7
CCDC28B-202ENST00000421922 WNT7AO00755 349 aa19.43■□□□□ 0.7
CCDC28B-202ENST00000421922 SLC25A27O95847 323 aa19.43■□□□□ 0.7
CCDC28B-202ENST00000421922 SLC10A3P09131 477 aa19.43■□□□□ 0.7
CCDC28B-202ENST00000421922 SREBF1P36956 1147 aa19.43■□□□□ 0.7
CCDC28B-202ENST00000421922 NCAPG2Q86XI2 1143 aa19.43■□□□□ 0.7
CCDC28B-202ENST00000421922 RIOX2Q8IUF8 465 aa19.43■□□□□ 0.7
CCDC28B-202ENST00000421922 TBC1D5Q92609 795 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms