RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 LRRC31Q6UY01 552 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 CSGALNACT2Q8N6G5 542 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 ZNF652Q9Y2D9 606 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 CNTNAP4Q9C0A0 1308 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 EIF3CLB5ME19 914 aaKnown RBP11.03□□□□□ -0.64
SS18-203ENST00000415083 SLURP2P0DP57 97 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 APBA1Q02410 837 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 EHHADHQ08426 723 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 TXLNBQ8N3L3 684 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 ERGIC2Q96RQ1 377 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 EIF3CQ99613 913 aaKnown RBP11.03□□□□□ -0.64
SS18-203ENST00000415083 LRWD1Q9UFC0 647 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 CCDC194A0A1B0GVG4 234 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 KLRF2D3W0D1 207 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 ERCC3P19447 782 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 KIF5BP33176 963 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 DNM2P50570 870 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 ASTE1Q2TB18 679 aaPredicted RBP11.03□□□□□ -0.64
SS18-203ENST00000415083 CENPPQ6IPU0 288 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 TMED8Q6PL24 325 aaPredicted RBP11.03□□□□□ -0.64
SS18-203ENST00000415083 BAP1Q92560 729 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 JAKMIP2Q96AA8 810 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 DHTKD1Q96HY7 919 aaPredicted RBP11.03□□□□□ -0.64
SS18-203ENST00000415083 SLC39A2Q9NP94 309 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 NARFQ9UHQ1 456 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 LY75O60449 1722 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 CCNT1O60563 726 aaKnown RBP11.03□□□□□ -0.64
SS18-203ENST00000415083 PPP1R11O60927 126 aaPredicted RBP11.03□□□□□ -0.64
SS18-203ENST00000415083 HNRNPH3P31942 346 aaKnown RBP11.03□□□□□ -0.64
SS18-203ENST00000415083 PPP4CP60510 307 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 PIP4K2BP78356 416 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 PDE4DQ08499 809 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 LETM2Q2VYF4 491 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 CLEC10AQ8IUN9 316 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 RRP36Q96EU6 259 aaKnown RBP11.03□□□□□ -0.64
SS18-203ENST00000415083 DNAJC5Q9H3Z4 198 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 PLEKHA4Q9H4M7 779 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 SAR1BQ9Y6B6 198 aa11.03□□□□□ -0.64
SS18-203ENST00000415083 GREB1LQ9C091 1923 aaPredicted RBP11.02□□□□□ -0.64
SS18-203ENST00000415083 LCA5LO95447 670 aa11.02□□□□□ -0.64
SS18-203ENST00000415083 OR52Z1P0C646 297 aa11.02□□□□□ -0.64
SS18-203ENST00000415083 ACTN2P35609 894 aa11.02□□□□□ -0.64
SS18-203ENST00000415083 RHBDL3P58872 404 aa11.02□□□□□ -0.64
SS18-203ENST00000415083 KCNMA1Q12791 1236 aa11.02□□□□□ -0.64
SS18-203ENST00000415083 LRRC55Q6ZSA7 311 aa11.02□□□□□ -0.64
SS18-203ENST00000415083 PIGSQ96S52 555 aa11.02□□□□□ -0.64
SS18-203ENST00000415083 PYM1Q9BRP8 204 aaKnown RBP11.02□□□□□ -0.64
SS18-203ENST00000415083 UBA5Q9GZZ9 404 aa11.02□□□□□ -0.64
SS18-203ENST00000415083 DMGDHQ9UI17 866 aaKnown RBP11.02□□□□□ -0.64
SS18-203ENST00000415083 USP17L5A8MUK1 530 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 UBA7P41226 1012 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 ZBED6P86452 979 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 TBC1D8BQ0IIM8 1120 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 COBLL1Q53SF7 1204 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 CCDC178Q5BJE1 867 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 HGSNATQ68CP4 663 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 BARGINQ6ZT62 677 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 TBCKQ8TEA7 893 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 SPZ1Q9BXG8 430 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 BIN2Q9UBW5 565 aaPredicted RBP11.02□□□□□ -0.65
SS18-203ENST00000415083 MACROD2A1Z1Q3 448 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 SMCO2A6NFE2 343 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 RPS6KA5O75582 802 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 TDP2O95551 362 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 CDK8P49336 464 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 CCNI2Q6ZMN8 369 aaPredicted RBP11.02□□□□□ -0.65
SS18-203ENST00000415083 CEP95Q96GE4 821 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 STX8Q9UNK0 236 aa11.02□□□□□ -0.65
SS18-203ENST00000415083 SIPA1L1O43166 1804 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 A0A1W2PQJ5 194 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 POTEB2H3BUK9 544 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 TLR2O60603 784 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 NOL4O94818 638 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 TSPY3P0CV98 308 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 TSPY8P0CW00 308 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 CDK17Q00537 523 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 C16orf86Q6ZW13 317 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 ZNF572Q7Z3I7 529 aaPredicted RBP11.01□□□□□ -0.65
SS18-203ENST00000415083 DZIP1Q86YF9 867 aaKnown RBP11.01□□□□□ -0.65
SS18-203ENST00000415083 PLCD3Q8N3E9 789 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 GOLGA5Q8TBA6 731 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 AENQ8WTP8 325 aaKnown RBP11.01□□□□□ -0.65
SS18-203ENST00000415083 CDCA7Q9BWT1 371 aaPredicted RBP11.01□□□□□ -0.65
SS18-203ENST00000415083 POTEMA6NI47 508 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 PSMA7O14818 248 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 NCK2O43639 380 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 MYL1P05976 194 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 KCTD19Q17RG1 926 aaPredicted RBP11.01□□□□□ -0.65
SS18-203ENST00000415083 FIGNQ5HY92 759 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 FAM182BQ5T319 152 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 NLRP3Q96P20 1036 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 EHD4Q9H223 541 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 FAM204AQ9H8W3 233 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 PLAGL2Q9UPG8 496 aa11.01□□□□□ -0.65
SS18-203ENST00000415083 PES1O00541 588 aaKnown RBP11□□□□□ -0.65
SS18-203ENST00000415083 RNF40O75150 1001 aa11□□□□□ -0.65
SS18-203ENST00000415083 MOCS3O95396 460 aa11□□□□□ -0.65
SS18-203ENST00000415083 GGCXP38435 758 aa11□□□□□ -0.65
SS18-203ENST00000415083 DPY19L2P1Q6NXN4 242 aa11□□□□□ -0.65
SS18-203ENST00000415083 TMC4Q7Z404 712 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms