RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 LRRC37A2A6NM11 1700 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 LAMA3Q16787 3333 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 BAZ2BQ9UIF8 2168 aaKnown RBP10.75□□□□□ -0.69
VPS53-203ENST00000401468 SNHG28P0DPA3 235 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 TOP1P11387 765 aaKnown RBP10.75□□□□□ -0.69
VPS53-203ENST00000401468 TAL1P17542 331 aaPredicted RBP10.75□□□□□ -0.69
VPS53-203ENST00000401468 ERCC3P19447 782 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 CASTP20810 708 aaKnown RBP10.75□□□□□ -0.69
VPS53-203ENST00000401468 DNAJB2P25686 324 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 RGS2P41220 211 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 MAP2K5Q13163 448 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 NCAPG2Q86XI2 1143 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 LRRC47Q8N1G4 583 aaKnown RBP10.75□□□□□ -0.69
VPS53-203ENST00000401468 TRPV1Q8NER1 839 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 USP6NLQ92738 828 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 MAP3K14Q99558 947 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 APBA2Q99767 749 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 ARHGEF10LQ9HCE6 1279 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 TOMM22Q9NS69 142 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 ISY1Q9ULR0 285 aaKnown RBP10.75□□□□□ -0.69
VPS53-203ENST00000401468 RABGAP1Q9Y3P9 1069 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 ADGRG1Q9Y653 693 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 CYP46A1Q9Y6A2 500 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 RPTORQ8N122 1335 aa10.75□□□□□ -0.69
VPS53-203ENST00000401468 PGK2P07205 417 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 CPA1P15085 419 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 ADORA2AP29274 412 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 RCAN1P53805 252 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 COPS2P61201 443 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 TOB2Q14106 344 aaPredicted RBP10.74□□□□□ -0.69
VPS53-203ENST00000401468 COG2Q14746 738 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 SART3Q15020 963 aaKnown RBP10.74□□□□□ -0.69
VPS53-203ENST00000401468 RABEP1Q15276 862 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 TMTC2Q8N394 836 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 SOCS4Q8WXH5 440 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 LPAR1Q92633 364 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 LENG1Q96BZ8 264 aaPredicted RBP10.74□□□□□ -0.69
VPS53-203ENST00000401468 TMEM47Q9BQJ4 181 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 ZKSCAN3Q9BRR0 538 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 UBAC1Q9BSL1 405 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 COL25A1Q9BXS0 654 aaPredicted RBP10.74□□□□□ -0.69
VPS53-203ENST00000401468 SPATC1LQ9H0A9 340 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 SH2D4AQ9H788 454 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 VCPKMTQ9H867 229 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 IVNS1ABPQ9Y6Y0 642 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 PFASO15067 1338 aa10.74□□□□□ -0.69
VPS53-203ENST00000401468 DOCK5Q9H7D0 1870 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 IFIT3O14879 490 aaKnown RBP10.73□□□□□ -0.69
VPS53-203ENST00000401468 COBLO75128 1261 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 SNAP25P60880 206 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 TROAPQ12815 778 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 TMEM132BQ14DG7 1078 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 TMEM67Q5HYA8 995 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 MAP3K21Q5TCX8 1036 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 LBX2Q6XYB7 198 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 CHST3Q7LGC8 479 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 GMCL1Q96IK5 515 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 HTATIP2Q9BUP3 242 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 UPF3BQ9BZI7 483 aaKnown RBP10.73□□□□□ -0.69
VPS53-203ENST00000401468 SENP2Q9HC62 589 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 CLIP2Q9UDT6 1046 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 STX8Q9UNK0 236 aa10.73□□□□□ -0.69
VPS53-203ENST00000401468 MYO9BQ13459 2157 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 SPTBN5Q9NRC6 3674 aaKnown RBP10.72□□□□□ -0.69
VPS53-203ENST00000401468 F5H6K3 240 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 PLA2G6O60733 806 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 CCNA1P78396 465 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 KLRC3Q07444 240 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 GRB14Q14449 540 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 WTAPQ15007 396 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 GJC2Q5T442 439 aaPredicted RBP10.72□□□□□ -0.69
VPS53-203ENST00000401468 IFIT1BQ5T764 474 aaKnown RBP10.72□□□□□ -0.69
VPS53-203ENST00000401468 NECAB2Q7Z6G3 386 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 DPP9Q86TI2 863 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 PNMA1Q8ND90 353 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 PRR14Q9BWN1 585 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 C11orf49Q9H6J7 331 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 GOPCQ9HD26 462 aa10.72□□□□□ -0.69
VPS53-203ENST00000401468 DDX49Q9Y6V7 483 aaKnown RBP10.72□□□□□ -0.69
VPS53-203ENST00000401468 ERICH2A1L162 156 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 SLC15A5A6NIM6 579 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 SOX1O00570 391 aaPredicted RBP10.71□□□□□ -0.69
VPS53-203ENST00000401468 DDAH1O94760 285 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 NDUFB10O96000 172 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 PDHBP11177 359 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 NEK4P51957 841 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 ANKRD1Q15327 319 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 LRRC26Q2I0M4 334 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 KIAA1217Q5T5P2 1943 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 PPP1R18Q6NYC8 613 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 APOA5Q6Q788 366 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 Q6ZUG5 572 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 CPXCR1Q8N123 301 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 DCAF4Q8WV16 495 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 ZNF274Q96GC6 653 aaPredicted RBP10.71□□□□□ -0.69
VPS53-203ENST00000401468 TCEANC2Q96MN5 208 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 LRRC2Q9BYS8 371 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 TMEM134Q9H6X4 195 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 KAT14Q9H8E8 782 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 HOMER2Q9NSB8 354 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms