RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 BANK1Q8NDB2 785 aa11.3□□□□□ -0.6
NEDD9-203ENST00000397378 MRPL38Q96DV4 380 aaKnown RBP11.3□□□□□ -0.6
NEDD9-203ENST00000397378 FGD4Q96M96 766 aa11.3□□□□□ -0.6
NEDD9-203ENST00000397378 RAD9AQ99638 391 aa11.3□□□□□ -0.6
NEDD9-203ENST00000397378 SLF1Q9BQI6 1058 aa11.3□□□□□ -0.6
NEDD9-203ENST00000397378 CLDND1Q9NY35 253 aa11.3□□□□□ -0.6
NEDD9-203ENST00000397378 CTDP1Q9Y5B0 961 aaPredicted RBP11.3□□□□□ -0.6
NEDD9-203ENST00000397378 MYO15AQ9UKN7 3530 aa11.3□□□□□ -0.6
NEDD9-203ENST00000397378 ZFHX2Q9C0A1 2572 aaPredicted RBP11.3□□□□□ -0.6
NEDD9-203ENST00000397378 ZBED9Q6R2W3 1325 aa11.3□□□□□ -0.6
NEDD9-203ENST00000397378 COL4A6Q14031 1691 aa11.3□□□□□ -0.6
NEDD9-203ENST00000397378 CYP2D7A0A087X1C5 515 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 USP17L12C9JPN9 530 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 USP17L21D6R901 530 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 H0Y858 1186 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 PITPNM1O00562 1244 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 PRKAB2O43741 272 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 MBD4O95243 580 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 GJB5O95377 273 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 SMPD1P17405 629 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 ADD2P35612 726 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 CLUL1Q15846 466 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 TCEAL5Q5H9L2 206 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 FAM117BQ6P1L5 589 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 ITPRIPQ8IWB1 547 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 FTSJ3Q8IY81 847 aaKnown RBP11.29□□□□□ -0.6
NEDD9-203ENST00000397378 PRPF38AQ8NAV1 312 aaKnown RBP11.29□□□□□ -0.6
NEDD9-203ENST00000397378 RHPN1Q8TCX5 695 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 DNAJC2Q99543 621 aaKnown RBP11.29□□□□□ -0.6
NEDD9-203ENST00000397378 C17orf80Q9BSJ5 609 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 IL1RAPL2Q9NP60 686 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 TLR9Q9NR96 1032 aa11.29□□□□□ -0.6
NEDD9-203ENST00000397378 RLBP1P12271 317 aa11.28□□□□□ -0.6
NEDD9-203ENST00000397378 VCPP55072 806 aaKnown RBP11.28□□□□□ -0.6
NEDD9-203ENST00000397378 BFSP2Q13515 415 aa11.28□□□□□ -0.6
NEDD9-203ENST00000397378 SMAD2Q15796 467 aaKnown RBP11.28□□□□□ -0.6
NEDD9-203ENST00000397378 CLASRPQ8N2M8 674 aaKnown RBP11.28□□□□□ -0.6
NEDD9-203ENST00000397378 PPP1R13LQ8WUF5 828 aa11.28□□□□□ -0.6
NEDD9-203ENST00000397378 DDRGK1Q96HY6 314 aa11.28□□□□□ -0.6
NEDD9-203ENST00000397378 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.28□□□□□ -0.6
NEDD9-203ENST00000397378 NYAP2Q9P242 653 aa11.28□□□□□ -0.6
NEDD9-203ENST00000397378 TRPC6Q9Y210 931 aa11.28□□□□□ -0.6
NEDD9-203ENST00000397378 NOD1Q9Y239 953 aa11.28□□□□□ -0.6
NEDD9-203ENST00000397378 PRR23AA6NEV1 266 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 STXBP3O00186 592 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 KDM4AO75164 1064 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 MYL3P08590 195 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 CNTN2Q02246 1040 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 CTR9Q6PD62 1173 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 EEPD1Q7L9B9 569 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 POTEDQ86YR6 584 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 CHST13Q8NET6 341 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 KIF1BPQ96EK5 621 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 NUP88Q99567 741 aaPredicted RBP11.27□□□□□ -0.61
NEDD9-203ENST00000397378 FSD1Q9BTV5 496 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.27□□□□□ -0.61
NEDD9-203ENST00000397378 SLC38A10Q9HBR0 1119 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 RAVER2Q9HCJ3 691 aaKnown RBP11.27□□□□□ -0.61
NEDD9-203ENST00000397378 ALG13Q9NP73 1137 aaKnown RBP11.27□□□□□ -0.61
NEDD9-203ENST00000397378 GPHNQ9NQX3 736 aaPredicted RBP11.27□□□□□ -0.61
NEDD9-203ENST00000397378 HOMER2Q9NSB8 354 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 POLR3EQ9NVU0 708 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 PAG1Q9NWQ8 432 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 FBXO40Q9UH90 709 aa11.27□□□□□ -0.61
NEDD9-203ENST00000397378 TRIP12Q14669 1992 aaPredicted RBP11.27□□□□□ -0.61
NEDD9-203ENST00000397378 PROB1E7EW31 1015 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 F5H6K3 240 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 MBTPS2O43462 519 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 ZBED4O75132 1171 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 RGS20O76081 388 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 NDUFB10O96000 172 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 IFIT2P09913 472 aaKnown RBP11.26□□□□□ -0.61
NEDD9-203ENST00000397378 OAZ1P54368 228 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 KLRC3Q07444 240 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 UBE3CQ15386 1083 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 LRRFIP1Q32MZ4 808 aaKnown RBP11.26□□□□□ -0.61
NEDD9-203ENST00000397378 SLFNL1Q499Z3 407 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 TMEM63BQ5T3F8 832 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 IQSEC1Q6DN90 963 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 CNKSR3Q6P9H4 555 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 RPAINQ86UA6 219 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 NSUN3Q9H649 340 aaKnown RBP11.26□□□□□ -0.61
NEDD9-203ENST00000397378 PDGFCQ9NRA1 345 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 ARPP21Q9UBL0 812 aaPredicted RBP11.26□□□□□ -0.61
NEDD9-203ENST00000397378 Q9Y3F1 56 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 LCTP09848 1927 aa11.26□□□□□ -0.61
NEDD9-203ENST00000397378 PTPRZ1P23471 2315 aaPredicted RBP11.26□□□□□ -0.61
NEDD9-203ENST00000397378 CACNA1BQ00975 2339 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 MED19A0JLT2 244 aaPredicted RBP11.25□□□□□ -0.61
NEDD9-203ENST00000397378 ASB14A6NK59 587 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 FDX1P10109 184 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 ATP5JP18859 108 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 RASA1P20936 1047 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 AVPR2P30518 371 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 ZXDAP98168 799 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 PURAQ00577 322 aaKnown RBP11.25□□□□□ -0.61
NEDD9-203ENST00000397378 NBPF20Q3BBV1 942 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 SBK1Q52WX2 424 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 FBXO16Q8IX29 292 aaPredicted RBP11.25□□□□□ -0.61
NEDD9-203ENST00000397378 MTG1Q9BT17 334 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms