RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CAGE1Q8TC20 777 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 ERGIC2Q96RQ1 377 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 TMEM47Q9BQJ4 181 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 SEMA6BQ9H3T3 888 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 COL14A1Q05707 1796 aaKnown RBP14.17□□□□□ -0.14
SHMT1-205ENST00000395684 AGPSO00116 658 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 KCNQ2O43526 872 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 OR52Z1P0C646 297 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 GGCXP38435 758 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 KCNQ4P56696 695 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 CDK17Q00537 523 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 FIGNQ5HY92 759 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 TBC1D9BQ66K14 1250 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 DZIP1Q86YF9 867 aaKnown RBP14.17□□□□□ -0.14
SHMT1-205ENST00000395684 CREG2Q8IUH2 290 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 SH3RF3Q8TEJ3 882 aaPredicted RBP14.17□□□□□ -0.14
SHMT1-205ENST00000395684 SECISBP2LQ93073 1101 aaKnown RBP14.17□□□□□ -0.14
SHMT1-205ENST00000395684 CCDC42Q96M95 316 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 AK8Q96MA6 479 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 MMTAG2Q9BU76 263 aaKnown RBP14.17□□□□□ -0.14
SHMT1-205ENST00000395684 ZMYND12Q9H0C1 365 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 RASSF4Q9H2L5 321 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 STX8Q9UNK0 236 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 A0A1W2PQJ5 194 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 EPHB6O15197 1021 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 TSPY3P0CV98 308 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 TSPY8P0CW00 308 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 TECP42680 631 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 CCDC24Q8N4L8 307 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 SELENOOQ9BVL4 669 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 TRIM34Q9BYJ4 488 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 MAGEF1Q9HAY2 307 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 CAPN6Q9Y6Q1 641 aa14.17□□□□□ -0.14
SHMT1-205ENST00000395684 FAM114A1Q8IWE2 563 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 AFAP1L1Q8TED9 768 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 SLC39A2Q9NP94 309 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 ARHGAP20Q9P2F6 1191 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 PLAGL2Q9UPG8 496 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 VGLL3A8MV65 326 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 KLRF2D3W0D1 207 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 EZH2Q15910 746 aaKnown RBP14.16□□□□□ -0.14
SHMT1-205ENST00000395684 LINC00116Q8NCU8 138 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 HDAC7Q8WUI4 952 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 PLEKHA4Q9H4M7 779 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 SNX12Q9UMY4 172 aa14.16□□□□□ -0.14
SHMT1-205ENST00000395684 HNRNPH3P31942 346 aaKnown RBP14.15□□□□□ -0.14
SHMT1-205ENST00000395684 CCDC96Q2M329 555 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 SLC51AQ86UW1 340 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 ZNF444Q8N0Y2 327 aaPredicted RBP14.15□□□□□ -0.14
SHMT1-205ENST00000395684 CCDC47Q96A33 483 aaKnown RBP14.15□□□□□ -0.14
SHMT1-205ENST00000395684 MLXIPQ9HAP2 919 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 JRKLQ9Y4A0 524 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 SMCO2A6NFE2 343 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 NAPAP54920 295 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 SPA17Q15506 151 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 DIXDC1Q155Q3 683 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 GRIK5Q16478 980 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 FKBP15Q5T1M5 1219 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 CENPPQ6IPU0 288 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 C2CD5Q86YS7 1000 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 GPIHBP1Q8IV16 184 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 ANKRD2Q9GZV1 360 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 SIK3Q9Y2K2 1263 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 PCDHA13Q9Y5I0 950 aa14.15□□□□□ -0.14
SHMT1-205ENST00000395684 NONOQ15233 471 aaKnown RBP eCLIP14.14□□□□□ -0.15
SHMT1-205ENST00000395684 TMED8Q6PL24 325 aaPredicted RBP14.14□□□□□ -0.15
SHMT1-205ENST00000395684 TRIM58Q8NG06 486 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 TGFBRAP1Q8WUH2 860 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 DRC1Q96MC2 740 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 NLRP3Q96P20 1036 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 IFIH1Q9BYX4 1025 aaKnown RBP14.14□□□□□ -0.15
SHMT1-205ENST00000395684 TSGA10Q9BZW7 698 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 SH2D4AQ9H788 454 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 FAM207AQ9NSI2 230 aaPredicted RBP14.14□□□□□ -0.15
SHMT1-205ENST00000395684 RSPH14Q9UHP6 348 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 DMGDHQ9UI17 866 aaKnown RBP14.14□□□□□ -0.15
SHMT1-205ENST00000395684 SPATA31A1Q5TZJ5 1347 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 IRS2Q9Y4H2 1338 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 MOCS3O95396 460 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 RASA1P20936 1047 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 MRPS25P82663 173 aaKnown RBP14.14□□□□□ -0.15
SHMT1-205ENST00000395684 VWA3BQ502W6 1294 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 CNNM4Q6P4Q7 775 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 KRT25Q7Z3Z0 450 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 NEK8Q86SG6 692 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 FNBP4Q8N3X1 1017 aaPredicted RBP14.14□□□□□ -0.15
SHMT1-205ENST00000395684 GOLGA6L1Q8N7Z2 621 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 AENQ8WTP8 325 aaKnown RBP14.14□□□□□ -0.15
SHMT1-205ENST00000395684 CRACR2AQ9BSW2 395 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 LRRC1Q9BTT6 524 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 CDCA7Q9BWT1 371 aaPredicted RBP14.14□□□□□ -0.15
SHMT1-205ENST00000395684 NDST4Q9H3R1 872 aa14.14□□□□□ -0.15
SHMT1-205ENST00000395684 ROBO3Q96MS0 1386 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 EIF4A3P38919 411 aaKnown RBP14.13□□□□□ -0.15
SHMT1-205ENST00000395684 KIF11P52732 1056 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 AMPD3Q01432 767 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 COBLL1Q53SF7 1204 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 SPTY2D1Q68D10 685 aaPredicted RBP14.13□□□□□ -0.15
SHMT1-205ENST00000395684 MMGT1Q8N4V1 131 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 TBCKQ8TEA7 893 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms