RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CDKN2AIPQ9NXV6 580 aaPredicted RBP25.15■■□□□ 1.62
CLN3-207ENST00000395653 SEC63Q9UGP8 760 aaKnown RBP25.15■■□□□ 1.62
CLN3-207ENST00000395653 DDX20Q9UHI6 824 aaKnown RBP25.15■■□□□ 1.62
CLN3-207ENST00000395653 LCTP09848 1927 aa25.15■■□□□ 1.62
CLN3-207ENST00000395653 ASTN1O14525 1302 aa25.15■■□□□ 1.62
CLN3-207ENST00000395653 BAZ2BQ9UIF8 2168 aaKnown RBP25.14■■□□□ 1.62
CLN3-207ENST00000395653 SEPT4O43236 478 aa25.14■■□□□ 1.62
CLN3-207ENST00000395653 CALML3P27482 149 aa25.14■■□□□ 1.62
CLN3-207ENST00000395653 METAP2P50579 478 aaKnown RBP eCLIP25.14■■□□□ 1.62
CLN3-207ENST00000395653 LHX8Q68G74 356 aa25.14■■□□□ 1.62
CLN3-207ENST00000395653 NAP1L2Q9ULW6 460 aaPredicted RBP25.14■■□□□ 1.62
CLN3-207ENST00000395653 TFRCP02786 760 aaKnown RBP25.13■■□□□ 1.61
CLN3-207ENST00000395653 ZNF865P0CJ78 1059 aaPredicted RBP25.13■■□□□ 1.61
CLN3-207ENST00000395653 GHRHRQ02643 423 aa25.13■■□□□ 1.61
CLN3-207ENST00000395653 TOB2Q14106 344 aaPredicted RBP25.13■■□□□ 1.61
CLN3-207ENST00000395653 PIBF1Q8WXW3 757 aa25.13■■□□□ 1.61
CLN3-207ENST00000395653 ABHD16BQ9H3Z7 469 aa25.13■■□□□ 1.61
CLN3-207ENST00000395653 FAM217BQ9NTX9 383 aaPredicted RBP25.13■■□□□ 1.61
CLN3-207ENST00000395653 OGDHLQ9ULD0 1010 aa25.13■■□□□ 1.61
CLN3-207ENST00000395653 CCDC196A0A1B0GTZ2 297 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 OPLAHO14841 1288 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 SAMD3Q8N6K7 520 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 DNERQ8NFT8 737 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 PURBQ96QR8 312 aaKnown RBP25.12■■□□□ 1.61
CLN3-207ENST00000395653 PDRG1Q9NUG6 133 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 MAP3K20Q9NYL2 800 aaKnown RBP25.12■■□□□ 1.61
CLN3-207ENST00000395653 CNTNAP5Q8WYK1 1306 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 CDC27P30260 824 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 ALDH5A1P51649 535 aaPredicted RBP25.12■■□□□ 1.61
CLN3-207ENST00000395653 FUT2Q10981 343 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 CCDC82Q8N4S0 544 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 ANKLE1Q8NAG6 615 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 SYTL5Q8TDW5 730 aaPredicted RBP25.12■■□□□ 1.61
CLN3-207ENST00000395653 MORC4Q8TE76 937 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 TBC1D5Q92609 795 aa25.12■■□□□ 1.61
CLN3-207ENST00000395653 HSD17B4P51659 736 aa25.11■■□□□ 1.61
CLN3-207ENST00000395653 MLLT1Q03111 559 aaPredicted RBP25.11■■□□□ 1.61
CLN3-207ENST00000395653 ACVR2BQ13705 512 aa25.11■■□□□ 1.61
CLN3-207ENST00000395653 ALDH8A1Q9H2A2 487 aaPredicted RBP25.11■■□□□ 1.61
CLN3-207ENST00000395653 CFBP00751 764 aa25.1■■□□□ 1.61
CLN3-207ENST00000395653 AKR1A1P14550 325 aa25.1■■□□□ 1.61
CLN3-207ENST00000395653 PDIA3P30101 505 aaKnown RBP25.1■■□□□ 1.61
CLN3-207ENST00000395653 MPHOSPH6Q99547 160 aaKnown RBP25.1■■□□□ 1.61
CLN3-207ENST00000395653 KATNBL1Q9H079 304 aa25.1■■□□□ 1.61
CLN3-207ENST00000395653 ZHX1Q9UKY1 873 aaPredicted RBP25.1■■□□□ 1.61
CLN3-207ENST00000395653 FRMPD3Q5JV73 1810 aa25.09■■□□□ 1.61
CLN3-207ENST00000395653 ADD1P35611 737 aaKnown RBP25.09■■□□□ 1.61
CLN3-207ENST00000395653 UBE2Q1Q7Z7E8 422 aa25.09■■□□□ 1.61
CLN3-207ENST00000395653 ZNF274Q96GC6 653 aaPredicted RBP25.09■■□□□ 1.61
CLN3-207ENST00000395653 LRRC37A2A6NM11 1700 aa25.08■■□□□ 1.61
CLN3-207ENST00000395653 MCM3APO60318 1980 aa25.08■■□□□ 1.61
CLN3-207ENST00000395653 FARP2O94887 1054 aaPredicted RBP25.08■■□□□ 1.61
CLN3-207ENST00000395653 COL20A1Q9P218 1284 aa25.08■■□□□ 1.61
CLN3-207ENST00000395653 FAM184BQ9ULE4 1060 aa25.08■■□□□ 1.61
CLN3-207ENST00000395653 B4DLN1 442 aa25.07■■□□□ 1.6
CLN3-207ENST00000395653 EDNRBP24530 442 aa25.07■■□□□ 1.6
CLN3-207ENST00000395653 MRPL12P52815 198 aaKnown RBP25.07■■□□□ 1.6
CLN3-207ENST00000395653 VTA1Q9NP79 307 aa25.07■■□□□ 1.6
CLN3-207ENST00000395653 hCG_1642624A0A1W2PR95 340 aa25.06■■□□□ 1.6
CLN3-207ENST00000395653 GCOM1H8Y6P7 765 aaPredicted RBP25.06■■□□□ 1.6
CLN3-207ENST00000395653 POLR2MP0CAP2 368 aa25.06■■□□□ 1.6
CLN3-207ENST00000395653 RARBP10826 455 aa25.06■■□□□ 1.6
CLN3-207ENST00000395653 ANKRD1Q15327 319 aa25.06■■□□□ 1.6
CLN3-207ENST00000395653 NSUN6Q8TEA1 469 aaKnown RBP25.06■■□□□ 1.6
CLN3-207ENST00000395653 TAAR1Q96RJ0 339 aa25.06■■□□□ 1.6
CLN3-207ENST00000395653 DDX49Q9Y6V7 483 aaKnown RBP25.06■■□□□ 1.6
CLN3-207ENST00000395653 hCG_1984214I3L0E3 225 aa25.05■■□□□ 1.6
CLN3-207ENST00000395653 ANO1Q5XXA6 986 aa25.05■■□□□ 1.6
CLN3-207ENST00000395653 ZNF713Q8N859 430 aaPredicted RBP25.05■■□□□ 1.6
CLN3-207ENST00000395653 RMDN3Q96TC7 470 aa25.05■■□□□ 1.6
CLN3-207ENST00000395653 V9GY48 417 aaPredicted RBP25.05■■□□□ 1.6
CLN3-207ENST00000395653 MNX1P50219 401 aaPredicted RBP25.04■■□□□ 1.6
CLN3-207ENST00000395653 PDE4DQ08499 809 aa25.04■■□□□ 1.6
CLN3-207ENST00000395653 NTRK3Q16288 839 aa25.04■■□□□ 1.6
CLN3-207ENST00000395653 CCDC144BQ3MJ40 725 aa25.04■■□□□ 1.6
CLN3-207ENST00000395653 RBM27Q9P2N5 1060 aaKnown RBP25.04■■□□□ 1.6
CLN3-207ENST00000395653 MKI67P46013 3256 aaKnown RBP25.04■■□□□ 1.6
CLN3-207ENST00000395653 HOXA13P31271 388 aaPredicted RBP25.03■■□□□ 1.6
CLN3-207ENST00000395653 CCT2P78371 535 aaKnown RBP25.03■■□□□ 1.6
CLN3-207ENST00000395653 HEATR3Q7Z4Q2 680 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 FBXO16Q8IX29 292 aaPredicted RBP25.03■■□□□ 1.6
CLN3-207ENST00000395653 ARRDC4Q8NCT1 418 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 IWS1Q96ST2 819 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 LARP6Q9BRS8 491 aaKnown RBP25.03■■□□□ 1.6
CLN3-207ENST00000395653 C22orf23Q9BZE7 217 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 XPNPEP3Q9NQH7 507 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 PIK3CDO00329 1044 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 IFNAR1P17181 557 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 RBM25P49756 843 aaKnown RBP25.03■■□□□ 1.6
CLN3-207ENST00000395653 AK2P54819 239 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 ARHGEF16Q5VV41 709 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 WWC2Q6AWC2 1192 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 TAPT1Q6NXT6 567 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 PPP1R18Q6NYC8 613 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 EEPD1Q7L9B9 569 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 NECAB2Q7Z6G3 386 aa25.03■■□□□ 1.6
CLN3-207ENST00000395653 GPKOWQ92917 476 aaPredicted RBP eCLIP25.03■■□□□ 1.6
CLN3-207ENST00000395653 PAWRQ96IZ0 340 aaKnown RBP25.03■■□□□ 1.6
CLN3-207ENST00000395653 NCOA5Q9HCD5 579 aaKnown RBP25.03■■□□□ 1.6
CLN3-207ENST00000395653 PXMP2Q9NR77 195 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms