RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ANKS1AQ92625 1134 aa23.03■■□□□ 1.28
CLK3-202ENST00000395066 PSMD14O00487 310 aa23.03■■□□□ 1.28
CLK3-202ENST00000395066 MIIPQ5JXC2 388 aa23.03■■□□□ 1.28
CLK3-202ENST00000395066 WDR93Q6P2C0 686 aa23.03■■□□□ 1.28
CLK3-202ENST00000395066 TPTE2Q6XPS3 522 aa23.03■■□□□ 1.28
CLK3-202ENST00000395066 NOC4LQ9BVI4 516 aaKnown RBP23.03■■□□□ 1.28
CLK3-202ENST00000395066 ACBD3Q9H3P7 528 aa23.03■■□□□ 1.28
CLK3-202ENST00000395066 MYH1P12882 1939 aa23.02■■□□□ 1.28
CLK3-202ENST00000395066 KIAA0895Q8NCT3 520 aa23.02■■□□□ 1.28
CLK3-202ENST00000395066 PIGSQ96S52 555 aa23.02■■□□□ 1.28
CLK3-202ENST00000395066 MMTAG2Q9BU76 263 aaKnown RBP23.02■■□□□ 1.28
CLK3-202ENST00000395066 SAR1BQ9Y6B6 198 aa23.02■■□□□ 1.28
CLK3-202ENST00000395066 CCNE1P24864 410 aa23.02■■□□□ 1.28
CLK3-202ENST00000395066 TXKP42681 527 aa23.02■■□□□ 1.28
CLK3-202ENST00000395066 TBCKQ8TEA7 893 aa23.02■■□□□ 1.28
CLK3-202ENST00000395066 NRAPQ86VF7 1730 aa23.02■■□□□ 1.28
CLK3-202ENST00000395066 EPHB6O15197 1021 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 EYA3Q99504 573 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 ZMYND12Q9H0C1 365 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 MED4Q9NPJ6 270 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 MAST2Q6P0Q8 1798 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 PDE2AO00408 941 aaPredicted RBP23.01■■□□□ 1.27
CLK3-202ENST00000395066 ZNF263O14978 683 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 ATP2B2Q01814 1243 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 NONOQ15233 471 aaKnown RBP eCLIP23.01■■□□□ 1.275e-7■■□□□ 13.6
CLK3-202ENST00000395066 MEA1Q16626 185 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 DYMQ7RTS9 669 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 AMOTL1Q8IY63 956 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 DHTKD1Q96HY7 919 aaPredicted RBP23.01■■□□□ 1.27
CLK3-202ENST00000395066 DRC1Q96MC2 740 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 SEMA6BQ9H3T3 888 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 RSPH14Q9UHP6 348 aa23.01■■□□□ 1.27
CLK3-202ENST00000395066 FRMPD2Q68DX3 1309 aaPredicted RBP23■■□□□ 1.27
CLK3-202ENST00000395066 CDK8P49336 464 aa23■■□□□ 1.27
CLK3-202ENST00000395066 BTDP43251 543 aa23■■□□□ 1.27
CLK3-202ENST00000395066 TNNT3P45378 269 aaPredicted RBP23■■□□□ 1.27
CLK3-202ENST00000395066 MRPS25P82663 173 aaKnown RBP23■■□□□ 1.27
CLK3-202ENST00000395066 UIMC1Q96RL1 719 aa23■■□□□ 1.27
CLK3-202ENST00000395066 BAG3O95817 575 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 WDR66Q8TBY9 1149 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 CEP95Q96GE4 821 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 FAM207AQ9NSI2 230 aaPredicted RBP22.99■■□□□ 1.27
CLK3-202ENST00000395066 LRWD1Q9UFC0 647 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 ROBO3Q96MS0 1386 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 CNTNAP4Q9C0A0 1308 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 GOLGB1Q14789 3259 aaKnown RBP22.99■■□□□ 1.27
CLK3-202ENST00000395066 SNED1Q8TER0 1413 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 PRPHP41219 470 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 USP14P54578 494 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 FOXR1Q6PIV2 292 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 NEK8Q86SG6 692 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 CLEC10AQ8IUN9 316 aa22.99■■□□□ 1.27
CLK3-202ENST00000395066 RTFDC1Q9BY42 306 aaPredicted RBP22.99■■□□□ 1.27
CLK3-202ENST00000395066 TNRC6CQ9HCJ0 1690 aaKnown RBP22.99■■□□□ 1.27
CLK3-202ENST00000395066 USP17L5A8MUK1 530 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 KRT83P78385 493 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 GLIS3Q8NEA6 775 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 ARHGEF1Q92888 912 aaKnown RBP22.98■■□□□ 1.27
CLK3-202ENST00000395066 GJA10Q969M2 543 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 JADE2Q9NQC1 790 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 ZNHIT6Q9NWK9 470 aaKnown RBP22.98■■□□□ 1.27
CLK3-202ENST00000395066 KRT86O43790 486 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 MYBL2P10244 700 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 CYLC1P35663 651 aaPredicted RBP22.98■■□□□ 1.27
CLK3-202ENST00000395066 EIF6P56537 245 aaKnown RBP22.98■■□□□ 1.27
CLK3-202ENST00000395066 C2orf54Q08AI8 447 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 CAGE1Q8TC20 777 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 RIN2Q8WYP3 895 aaPredicted RBP22.98■■□□□ 1.27
CLK3-202ENST00000395066 COA7Q96BR5 231 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 FAM204AQ9H8W3 233 aa22.98■■□□□ 1.27
CLK3-202ENST00000395066 LAD1O00515 517 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 MYL1P05976 194 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 IDEP14735 1019 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 ZBED6P86452 979 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 PAPD7Q5XG87 772 aaKnown RBP22.97■■□□□ 1.27
CLK3-202ENST00000395066 GALNT17Q6IS24 598 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 KRT25Q7Z3Z0 450 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 PSMB7Q99436 277 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 C7orf25Q9BPX7 421 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 SBF2Q86WG5 1849 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 POTEMA6NI47 508 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 SLC37A4O43826 429 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 RPS6KA4O75676 772 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 VIPAS39Q9H9C1 493 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 MLXIPQ9HAP2 919 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 C6orf50Q9HD87 102 aa22.97■■□□□ 1.27
CLK3-202ENST00000395066 NAV1Q8NEY1 1877 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 MYMKA6NI61 221 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 TDP2O95551 362 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 TEX11Q8IYF3 940 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 RRP36Q96EU6 259 aaKnown RBP22.96■■□□□ 1.27
CLK3-202ENST00000395066 NUDT12Q9BQG2 462 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 SPZ1Q9BXG8 430 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 CAPN6Q9Y6Q1 641 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 BICDL2A1A5D9 508 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 GRB10Q13322 594 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 LRRC41Q15345 812 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 CCDC96Q2M329 555 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 SOGA3Q5TF21 947 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 C2CD5Q86YS7 1000 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms