RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 EMBQ6PCB8 327 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 TTLL11Q8NHH1 800 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 STOML1Q9UBI4 398 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 G3BP2Q9UN86 482 aaKnown RBP12.88□□□□□ -0.35
SYNPO-202ENST00000394243 DMRT2Q9Y5R5 561 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 MAP3K5Q99683 1374 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 ENO4A6NNW6 628 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 ADD1P35611 737 aaKnown RBP12.88□□□□□ -0.35
SYNPO-202ENST00000394243 ADAM9Q13443 819 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 SLFNL1Q499Z3 407 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 SGO2Q562F6 1265 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 VSTM4Q8IW00 320 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.88□□□□□ -0.35
SYNPO-202ENST00000394243 POLR3CQ9BUI4 534 aaPredicted RBP12.88□□□□□ -0.35
SYNPO-202ENST00000394243 GLT8D2Q9H1C3 349 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 RNF14Q9UBS8 474 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 MT-ND3P03897 115 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 SYT2Q8N9I0 419 aaPredicted RBP12.88□□□□□ -0.35
SYNPO-202ENST00000394243 VTI1AQ96AJ9 217 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 PBKQ96KB5 322 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 AP1M1Q9BXS5 423 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 FGFR1OP2Q9NVK5 253 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 NSFL1CQ9UNZ2 370 aaKnown RBP12.88□□□□□ -0.35
SYNPO-202ENST00000394243 KDM3AQ9Y4C1 1321 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 H7C0C1 242 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 ECEL1O95672 775 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 ATP5OP48047 213 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 SCRN1Q12765 414 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 EXOC3L4Q17RC7 722 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 REXO1Q8N1G1 1221 aaKnown RBP12.87□□□□□ -0.35
SYNPO-202ENST00000394243 EDC3Q96F86 508 aaKnown RBP12.87□□□□□ -0.35
SYNPO-202ENST00000394243 NHEJ1Q9H9Q4 299 aaPredicted RBP12.87□□□□□ -0.35
SYNPO-202ENST00000394243 DENND2AQ9ULE3 1009 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 BZW2Q9Y6E2 419 aaKnown RBP12.87□□□□□ -0.35
SYNPO-202ENST00000394243 PRPF6O94906 941 aaKnown RBP12.87□□□□□ -0.35
SYNPO-202ENST00000394243 TRIM50Q86XT4 487 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 FNBP4Q8N3X1 1017 aaPredicted RBP12.87□□□□□ -0.35
SYNPO-202ENST00000394243 CAPN11Q9UMQ6 739 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 BTBD18B2RXH4 712 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 LMNB1P20700 586 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 TMTC4Q5T4D3 741 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 CCDC124Q96CT7 223 aaKnown RBP12.87□□□□□ -0.35
SYNPO-202ENST00000394243 DZIP3Q86Y13 1208 aaKnown RBP12.87□□□□□ -0.35
SYNPO-202ENST00000394243 ECM2O94769 699 aaPredicted RBP12.87□□□□□ -0.35
SYNPO-202ENST00000394243 NDUFA10O95299 355 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 ADCY2Q08462 1091 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 SRLQ86TD4 932 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 PPM1KQ8N3J5 372 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 SPC25Q9HBM1 224 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 FIS1Q9Y3D6 152 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 ZMYM6O95789 1325 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 A0A0D9SFI3 127 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 EXOC1LA0A1B0GW35 172 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 GMNCA6NCL1 334 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 CHRNA2Q15822 529 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 KRT28Q7Z3Y7 464 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 ZNF654Q8IZM8 581 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 TESK2Q96S53 571 aa12.87□□□□□ -0.35
SYNPO-202ENST00000394243 PSMD2Q13200 908 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 IDI1Q13907 227 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 USH1GQ495M9 461 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 MCUQ8NE86 351 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 ZNF532Q9HCE3 1301 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 SMCO2A6NFE2 343 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 TRIM66O15016 1216 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 CDAN1Q8IWY9 1227 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 C19orf44Q9H6X5 657 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 SAMSN1Q9NSI8 373 aaKnown RBP12.86□□□□□ -0.35
SYNPO-202ENST00000394243 MAN1B1Q9UKM7 699 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 TOP2BQ02880 1626 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 MYCLP12524 364 aaPredicted RBP12.86□□□□□ -0.35
SYNPO-202ENST00000394243 RAD23BP54727 409 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 GSPT2Q8IYD1 628 aaKnown RBP12.86□□□□□ -0.35
SYNPO-202ENST00000394243 CARD14Q9BXL6 1004 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 SMYD3Q9H7B4 428 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 PCDHA13Q9Y5I0 950 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 RIMS2Q9UQ26 1411 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 A0A0G2JND7 137 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 PTGDRQ13258 359 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 KIAA2013Q8IYS2 634 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 AATFQ9NY61 560 aaKnown RBP eCLIP12.86□□□□□ -0.35
SYNPO-202ENST00000394243 SATB2Q9UPW6 733 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 ATP5HO75947 161 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 CA4P22748 312 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 SKOR1P84550 965 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 PANX2Q96RD6 677 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 ECT2Q9H8V3 914 aa12.86□□□□□ -0.35
SYNPO-202ENST00000394243 ARHGEF9O43307 516 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 KDM1AO60341 852 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 PUM3Q15397 648 aaKnown RBP12.85□□□□□ -0.35
SYNPO-202ENST00000394243 FBXW10Q5XX13 1052 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 BLIDQ8IZY5 108 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 LZTS2Q9BRK4 669 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 WARS2Q9UGM6 360 aaKnown RBP12.85□□□□□ -0.35
SYNPO-202ENST00000394243 TRPC6Q9Y210 931 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 ACSL3O95573 720 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 PLS3P13797 630 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 ZCRB1Q8TBF4 217 aaKnown RBP12.85□□□□□ -0.35
SYNPO-202ENST00000394243 CARD10Q9BWT7 1032 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 GSTA4O15217 222 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms