RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 CENPPQ6IPU0 288 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 ALS2CR12Q96Q35 445 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 SELENOOQ9BVL4 669 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 LRRC27Q9C0I9 530 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 LACRTQ9GZZ8 138 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 ZNF287Q9HBT7 754 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 IL17RBQ9NRM6 502 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 RNF14Q9UBS8 474 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 STK17AQ9UEE5 414 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 TSKSQ9UJT2 592 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 COL5A3P25940 1745 aaPredicted RBP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 MYH14Q7Z406 1995 aaKnown RBP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 RCCD1A6NED2 376 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 GOLGA8KD6RF30 607 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 hCG_1984214I3L0E3 225 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 ADAMTS3O15072 1205 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 OPA1O60313 960 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 PLCG1P19174 1290 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 CORO7P57737 925 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 GSTO1P78417 241 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 NNTQ13423 1086 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 NONOQ15233 471 aaKnown RBP eCLIP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 ERFEQ4G0M1 354 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 ALS2CLQ60I27 953 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 CREG2Q8IUH2 290 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 ZNF713Q8N859 430 aaPredicted RBP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 FAM76AQ8TAV0 307 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 GPKOWQ92917 476 aaPredicted RBP eCLIP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 CALML4Q96GE6 196 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 NUCKS1Q9H1E3 243 aaKnown RBP11.13□□□□□ -0.63
COL17A1-203ENST00000393211 SH2D4AQ9H788 454 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 C6orf50Q9HD87 102 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 JADE2Q9NQC1 790 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 MCM9Q9NXL9 1143 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 HYOU1Q9Y4L1 999 aa11.13□□□□□ -0.63
COL17A1-203ENST00000393211 ESYT2A0FGR8 921 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 GOLGA6BA6NDN3 693 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 SRGAP2O75044 1071 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 CYP2D6P10635 497 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 EPB41P11171 864 aaKnown RBP11.12□□□□□ -0.63
COL17A1-203ENST00000393211 EPHB4P54760 987 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 RPS8P62241 208 aaKnown RBP11.12□□□□□ -0.63
COL17A1-203ENST00000393211 ASIC1P78348 528 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 LRRC63Q05C16 580 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 PPFIA1Q13136 1202 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 PSMD2Q13200 908 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 ITPK1Q13572 414 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 MAN2A1Q16706 1144 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 VWA3BQ502W6 1294 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 DNAJC21Q5F1R6 531 aaKnown RBP11.12□□□□□ -0.63
COL17A1-203ENST00000393211 TYW1BQ6NUM6 668 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 EMBQ6PCB8 327 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 C10orf67Q8IYJ2 551 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 STAG2Q8N3U4 1231 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 GUF1Q8N442 669 aaKnown RBP11.12□□□□□ -0.63
COL17A1-203ENST00000393211 RNF10Q8N5U6 811 aaKnown RBP11.12□□□□□ -0.63
COL17A1-203ENST00000393211 PPM1EQ8WY54 764 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 CAPZA3Q96KX2 299 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 PCMTD1Q96MG8 357 aaPredicted RBP11.12□□□□□ -0.63
COL17A1-203ENST00000393211 TRERF1Q96PN7 1200 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 IFIH1Q9BYX4 1025 aaKnown RBP11.12□□□□□ -0.63
COL17A1-203ENST00000393211 NYXQ9GZU5 481 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 LCMT1Q9UIC8 334 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 SIK3Q9Y2K2 1263 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 PCDHA13Q9Y5I0 950 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 KAT6BQ8WYB5 2073 aa11.12□□□□□ -0.63
COL17A1-203ENST00000393211 SSU72P8A0A1W2PR75 194 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 PP2D1A8MPX8 630 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 PDE2AO00408 941 aaPredicted RBP11.11□□□□□ -0.63
COL17A1-203ENST00000393211 PHACTR2O75167 634 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 GGCXP38435 758 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 PPP4CP60510 307 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 APBA1Q02410 837 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 STK4Q13043 487 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 MAPK8IP2Q13387 824 aaPredicted RBP11.11□□□□□ -0.63
COL17A1-203ENST00000393211 TXNRD1Q16881 649 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 CCDC96Q2M329 555 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 UNC13DQ70J99 1090 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 SV2BQ7L1I2 683 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 HEATR3Q7Z4Q2 680 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 NEK8Q86SG6 692 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 EFCAB13Q8IY85 973 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 ZNF444Q8N0Y2 327 aaPredicted RBP11.11□□□□□ -0.63
COL17A1-203ENST00000393211 WDR66Q8TBY9 1149 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 RASGRP4Q8TDF6 673 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 SYN2Q92777 582 aaPredicted RBP11.11□□□□□ -0.63
COL17A1-203ENST00000393211 SH3GL2Q99962 352 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 TRIM34Q9BYJ4 488 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 NDST4Q9H3R1 872 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 MKNK2Q9HBH9 465 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 RIC8AQ9NPQ8 531 aa11.11□□□□□ -0.63
COL17A1-203ENST00000393211 GOLGA6CA6NDK9 693 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 AGPSO00116 658 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 BAG3O95817 575 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 CPP00450 1065 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 LDHCP07864 332 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 GOLGA6DP0CG33 693 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 TSPY3P0CV98 308 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 TSPY8P0CW00 308 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 PAFAH1B1P43034 410 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms