RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 PCDHA7Q9UN72 937 aa14.11□□□□□ -0.15
CIITA-202ENST00000381835 PARP14Q460N5 1801 aa14.11□□□□□ -0.15
CIITA-202ENST00000381835 ZNF165P49910 485 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 LRMPQ12912 555 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 ZNF174Q15697 407 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 RBM43Q6ZSC3 357 aaKnown RBP14.1□□□□□ -0.15
CIITA-202ENST00000381835 KRT25Q7Z3Z0 450 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.1□□□□□ -0.15
CIITA-202ENST00000381835 PLA2G4DQ86XP0 818 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 CPXCR1Q8N123 301 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 OPTNQ96CV9 577 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 PPP1R9AQ9ULJ8 1098 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 SPDYE5A6NIY4 337 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L15C9J2P7 530 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L13C9JLJ4 530 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L11C9JVI0 530 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L18D6R9N7 530 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L22D6RA61 530 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L17D6RBQ6 530 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L19D6RCP7 530 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L20D6RJB6 530 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 CTIFO43310 598 aaKnown RBP14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L24Q0WX57 530 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 NONOQ15233 471 aaKnown RBP eCLIP14.1□□□□□ -0.15
CIITA-202ENST00000381835 USP17L6PQ6QN14 398 aa14.1□□□□□ -0.15
CIITA-202ENST00000381835 CTDP1Q9Y5B0 961 aaPredicted RBP14.1□□□□□ -0.15
CIITA-202ENST00000381835 CELF2O95319 508 aaKnown RBP14.09□□□□□ -0.15
CIITA-202ENST00000381835 DMTNQ08495 405 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 SH3D19Q5HYK7 790 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 LDLRAD1Q5T700 205 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 ANKRD7Q92527 254 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 AGBL1Q96MI9 1066 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 DNAJC25Q9H1X3 360 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.09□□□□□ -0.15
CIITA-202ENST00000381835 CEP131Q9UPN4 1083 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 RLFQ13129 1914 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 ZSCAN20P17040 1043 aaPredicted RBP14.09□□□□□ -0.15
CIITA-202ENST00000381835 MCM7P33993 719 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 TRAPPC10P48553 1259 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 TRAF1Q13077 416 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 GADL1Q6ZQY3 521 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 JMYQ8N9B5 988 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 TBCKQ8TEA7 893 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 ATG4CQ96DT6 458 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 SLC10A4Q96EP9 437 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 WNK4Q96J92 1243 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 C16orf45Q96MC5 204 aaPredicted RBP14.09□□□□□ -0.15
CIITA-202ENST00000381835 GBA2Q9HCG7 927 aaPredicted RBP14.09□□□□□ -0.15
CIITA-202ENST00000381835 CCPG1Q9ULG6 757 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 COL11A1P12107 1806 aaPredicted RBP14.09□□□□□ -0.15
CIITA-202ENST00000381835 MYH7BA7E2Y1 1941 aa14.09□□□□□ -0.15
CIITA-202ENST00000381835 PPP6R2O75170 966 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 CLK2P49760 499 aaKnown RBP14.08□□□□□ -0.16
CIITA-202ENST00000381835 TREML2Q5T2D2 321 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 UTP14CQ5TAP6 766 aaKnown RBP14.08□□□□□ -0.16
CIITA-202ENST00000381835 CATSPERGQ6ZRH7 1159 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 GLT8D2Q9H1C3 349 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 SLC38A10Q9HBR0 1119 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 RAVER2Q9HCJ3 691 aaKnown RBP14.08□□□□□ -0.16
CIITA-202ENST00000381835 ZNF536O15090 1300 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 MEIS2O14770 477 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 OPLAHO14841 1288 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 ZBED4O75132 1171 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 ICAM1P05362 532 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 PPIL2Q13356 520 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 COG2Q14746 738 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 LETM2Q2VYF4 491 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 ADALQ6DHV7 355 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 CCAR1Q8IX12 1150 aaKnown RBP14.08□□□□□ -0.16
CIITA-202ENST00000381835 CLIC6Q96NY7 704 aa14.08□□□□□ -0.16
CIITA-202ENST00000381835 A0A0G2JLL6 359 aaPredicted RBP14.07□□□□□ -0.16
CIITA-202ENST00000381835 SPDYE4A6NLX3 237 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 VWA5AO00534 786 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 TNNT1P13805 278 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 HOXA13P31271 388 aaPredicted RBP14.07□□□□□ -0.16
CIITA-202ENST00000381835 PTGDRQ13258 359 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 CHADLQ6NUI6 762 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 PRRT2Q7Z6L0 340 aaPredicted RBP14.07□□□□□ -0.16
CIITA-202ENST00000381835 NEK8Q86SG6 692 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 C2orf69Q8N8R5 385 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 MRPL11Q9Y3B7 192 aaKnown RBP14.07□□□□□ -0.16
CIITA-202ENST00000381835 SMTNL1A8MU46 457 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 GOLGA6L19H0YKK7 550 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 CXCL11O14625 94 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 CAVIN2O95810 425 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 CFBP00751 764 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 ALAS1P13196 640 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 DSG3P32926 999 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 AXDND1Q5T1B0 1012 aaPredicted RBP14.07□□□□□ -0.16
CIITA-202ENST00000381835 TBC1D5Q92609 795 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 HOMER2Q9NSB8 354 aa14.07□□□□□ -0.16
CIITA-202ENST00000381835 ABCB11O95342 1321 aa14.06□□□□□ -0.16
CIITA-202ENST00000381835 CCNT1O60563 726 aaKnown RBP14.06□□□□□ -0.16
CIITA-202ENST00000381835 GJA5P36382 358 aa14.06□□□□□ -0.16
CIITA-202ENST00000381835 FKBP1BP68106 108 aa14.06□□□□□ -0.16
CIITA-202ENST00000381835 TPD52L1Q16890 204 aaPredicted RBP14.06□□□□□ -0.16
CIITA-202ENST00000381835 KRI1Q8N9T8 703 aaKnown RBP14.06□□□□□ -0.16
CIITA-202ENST00000381835 FSIP1Q8NA03 581 aa14.06□□□□□ -0.16
CIITA-202ENST00000381835 KCNH4Q9UQ05 1017 aa14.06□□□□□ -0.16
CIITA-202ENST00000381835 A0A1B0GVL5 298 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms