RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 RRP36Q96EU6 259 aaKnown RBP28.29■■■□□ 2.12
C9orf40-201ENST00000376854 HDAC6Q9UBN7 1215 aa28.29■■■□□ 2.12
C9orf40-201ENST00000376854 RASSF10A6NK89 507 aa28.28■■■□□ 2.12
C9orf40-201ENST00000376854 FCER1AP12319 257 aa28.28■■■□□ 2.12
C9orf40-201ENST00000376854 CYLC1P35663 651 aaPredicted RBP28.28■■■□□ 2.12
C9orf40-201ENST00000376854 GYS2P54840 703 aa28.28■■■□□ 2.12
C9orf40-201ENST00000376854 PRR5LQ6MZQ0 368 aa28.28■■■□□ 2.12
C9orf40-201ENST00000376854 LY75O60449 1722 aa28.28■■■□□ 2.12
C9orf40-201ENST00000376854 BTDP43251 543 aa28.27■■■□□ 2.12
C9orf40-201ENST00000376854 MTIF2P46199 727 aaKnown RBP28.27■■■□□ 2.12
C9orf40-201ENST00000376854 SOGA3Q5TF21 947 aa28.27■■■□□ 2.12
C9orf40-201ENST00000376854 SEC63Q9UGP8 760 aaKnown RBP28.27■■■□□ 2.12
C9orf40-201ENST00000376854 EIF3JO75822 258 aaKnown RBP28.27■■■□□ 2.12
C9orf40-201ENST00000376854 AMPD3Q01432 767 aa28.27■■■□□ 2.12
C9orf40-201ENST00000376854 ZNF662Q6ZS27 426 aa28.27■■■□□ 2.12
C9orf40-201ENST00000376854 C16orf86Q6ZW13 317 aa28.27■■■□□ 2.12
C9orf40-201ENST00000376854 MSL3Q8N5Y2 521 aaKnown RBP28.27■■■□□ 2.12
C9orf40-201ENST00000376854 JAKMIP2Q96AA8 810 aa28.27■■■□□ 2.12
C9orf40-201ENST00000376854 PCMTD1Q96MG8 357 aaPredicted RBP28.27■■■□□ 2.12
C9orf40-201ENST00000376854 ATP1A1P05023 1023 aaKnown RBP28.26■■■□□ 2.12
C9orf40-201ENST00000376854 PPP1R2P41236 205 aa28.26■■■□□ 2.12
C9orf40-201ENST00000376854 ZBED6P86452 979 aa28.26■■■□□ 2.12
C9orf40-201ENST00000376854 EHBP1Q8NDI1 1231 aa28.26■■■□□ 2.12
C9orf40-201ENST00000376854 NEDD1Q8NHV4 660 aa28.26■■■□□ 2.12
C9orf40-201ENST00000376854 NOC4LQ9BVI4 516 aaKnown RBP28.26■■■□□ 2.12
C9orf40-201ENST00000376854 NHEJ1Q9H9Q4 299 aaPredicted RBP28.26■■■□□ 2.12
C9orf40-201ENST00000376854 VAT1LQ9HCJ6 419 aa28.26■■■□□ 2.12
C9orf40-201ENST00000376854 ADAM21Q9UKJ8 722 aa28.26■■■□□ 2.12
C9orf40-201ENST00000376854 NAV1Q8NEY1 1877 aa28.26■■■□□ 2.11
C9orf40-201ENST00000376854 SNED1Q8TER0 1413 aa28.26■■■□□ 2.11
C9orf40-201ENST00000376854 KRT86O43790 486 aa28.26■■■□□ 2.11
C9orf40-201ENST00000376854 HNRNPH2P55795 449 aaKnown RBP28.26■■■□□ 2.11
C9orf40-201ENST00000376854 TBCKQ8TEA7 893 aa28.26■■■□□ 2.11
C9orf40-201ENST00000376854 SAR1BQ9Y6B6 198 aa28.26■■■□□ 2.11
C9orf40-201ENST00000376854 MMTAG2Q9BU76 263 aaKnown RBP28.25■■■□□ 2.11
C9orf40-201ENST00000376854 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.25■■■□□ 2.11
C9orf40-201ENST00000376854 IPO7O95373 1038 aaKnown RBP28.25■■■□□ 2.11
C9orf40-201ENST00000376854 MIIPQ5JXC2 388 aa28.25■■■□□ 2.11
C9orf40-201ENST00000376854 PAPD7Q5XG87 772 aaKnown RBP28.25■■■□□ 2.11
C9orf40-201ENST00000376854 WDR93Q6P2C0 686 aa28.25■■■□□ 2.11
C9orf40-201ENST00000376854 CNNM4Q6P4Q7 775 aa28.25■■■□□ 2.11
C9orf40-201ENST00000376854 CCDC170Q8IYT3 715 aa28.25■■■□□ 2.11
C9orf40-201ENST00000376854 CERS3Q8IU89 383 aa28.24■■■□□ 2.11
C9orf40-201ENST00000376854 TEX11Q8IYF3 940 aa28.24■■■□□ 2.11
C9orf40-201ENST00000376854 EXOC4Q96A65 974 aa28.24■■■□□ 2.11
C9orf40-201ENST00000376854 CALML4Q96GE6 196 aa28.24■■■□□ 2.11
C9orf40-201ENST00000376854 PIGSQ96S52 555 aa28.24■■■□□ 2.11
C9orf40-201ENST00000376854 EIF3CLB5ME19 914 aaKnown RBP28.24■■■□□ 2.11
C9orf40-201ENST00000376854 CASP8Q14790 479 aa28.24■■■□□ 2.11
C9orf40-201ENST00000376854 ZSCAN29Q8IWY8 852 aaPredicted RBP28.24■■■□□ 2.11
C9orf40-201ENST00000376854 RPGRQ92834 1020 aaKnown RBP28.24■■■□□ 2.11
C9orf40-201ENST00000376854 EIF3CQ99613 913 aaKnown RBP28.24■■■□□ 2.11
C9orf40-201ENST00000376854 BIN2Q9UBW5 565 aaPredicted RBP28.24■■■□□ 2.11
C9orf40-201ENST00000376854 UFL1O94874 794 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 POTEDQ86YR6 584 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 REXO1Q8N1G1 1221 aaKnown RBP28.23■■■□□ 2.11
C9orf40-201ENST00000376854 KIAA0895Q8NCT3 520 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 HPS3Q969F9 1004 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 CEP95Q96GE4 821 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 LACRTQ9GZZ8 138 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 RCCD1A6NED2 376 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 SRGAP2O75044 1071 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 FKBP15Q5T1M5 1219 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 ERGIC2Q96RQ1 377 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 MMS19Q96T76 1030 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 CD209Q9NNX6 404 aa28.23■■■□□ 2.11
C9orf40-201ENST00000376854 GPR75-ASB3A0A0A6YYF3 556 aa28.22■■■□□ 2.11
C9orf40-201ENST00000376854 SMARCA1P28370 1054 aa28.22■■■□□ 2.11
C9orf40-201ENST00000376854 COBLL1Q53SF7 1204 aa28.22■■■□□ 2.11
C9orf40-201ENST00000376854 TXKP42681 527 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 C15orf52Q6ZUT6 534 aaKnown RBP28.21■■■□□ 2.11
C9orf40-201ENST00000376854 ZBTB9Q96C00 473 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 SLC39A2Q9NP94 309 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 TMEM260Q9NX78 707 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 PSD3Q9NYI0 1048 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 VPS18Q9P253 973 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 A0A1W2PQJ5 194 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 USP14P54578 494 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 ORC2Q13416 577 aaPredicted RBP28.21■■■□□ 2.11
C9orf40-201ENST00000376854 FIGNQ5HY92 759 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 SV2BQ7L1I2 683 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 UBA5Q9GZZ9 404 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 SEMA6BQ9H3T3 888 aa28.21■■■□□ 2.11
C9orf40-201ENST00000376854 MYH1P12882 1939 aa28.2■■■□□ 2.11
C9orf40-201ENST00000376854 N4BP1O75113 896 aaKnown RBP28.2■■■□□ 2.11
C9orf40-201ENST00000376854 NKRFO15226 690 aaKnown RBP eCLIP28.2■■■□□ 2.1
C9orf40-201ENST00000376854 CDK17Q00537 523 aa28.2■■■□□ 2.1
C9orf40-201ENST00000376854 GJD4Q96KN9 370 aaPredicted RBP28.2■■■□□ 2.1
C9orf40-201ENST00000376854 CAPZA3Q96KX2 299 aa28.2■■■□□ 2.1
C9orf40-201ENST00000376854 RNF216Q9NWF9 866 aaPredicted RBP28.2■■■□□ 2.1
C9orf40-201ENST00000376854 USP17L5A8MUK1 530 aa28.19■■■□□ 2.1
C9orf40-201ENST00000376854 LMAN1P49257 510 aa28.19■■■□□ 2.1
C9orf40-201ENST00000376854 CYP27A1Q02318 531 aa28.19■■■□□ 2.1
C9orf40-201ENST00000376854 ESYT2A0FGR8 921 aa28.19■■■□□ 2.1
C9orf40-201ENST00000376854 GYS1P13807 737 aa28.19■■■□□ 2.1
C9orf40-201ENST00000376854 PLCG2P16885 1265 aa28.19■■■□□ 2.1
C9orf40-201ENST00000376854 CKAP4Q07065 602 aaKnown RBP28.19■■■□□ 2.1
C9orf40-201ENST00000376854 GRB10Q13322 594 aa28.19■■■□□ 2.1
C9orf40-201ENST00000376854 CALCRLQ16602 461 aa28.19■■■□□ 2.1
C9orf40-201ENST00000376854 CENPPQ6IPU0 288 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms