RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 L1CAMP32004 1257 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 PRR5P85299 388 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 MBLAC2Q68D91 279 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 CNKSR3Q6P9H4 555 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 ZC3H14Q6PJT7 736 aaKnown RBP3.73□□□□□ -1.81
VPS13A-206ENST00000376646 ADGRG2Q8IZP9 1017 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 ARHGEF39Q8N4T4 335 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 PPP1R14AQ96A00 147 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 SPATA32Q96LK8 384 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 PWWP2AQ96N64 755 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 GBP3Q9H0R5 595 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 ZCCHC4Q9H5U6 513 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 SLC12A7Q9Y666 1083 aa3.73□□□□□ -1.81
VPS13A-206ENST00000376646 A0A087WZG4 1122 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 A0A0G2JLL6 359 aaPredicted RBP3.72□□□□□ -1.81
VPS13A-206ENST00000376646 RFXAPO00287 272 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 ABLIM1O14639 778 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 TBX1O43435 398 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 TBC1D8O95759 1140 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 SEPHS1P49903 392 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 AMPD2Q01433 879 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 CBX2Q14781 532 aaPredicted RBP3.72□□□□□ -1.81
VPS13A-206ENST00000376646 RCSD1Q6JBY9 416 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 ZDHHC14Q8IZN3 488 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 PARD6AQ9NPB6 346 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 AKT3Q9Y243 479 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 BACE2Q9Y5Z0 518 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 SMAD7O15105 426 aaKnown RBP3.72□□□□□ -1.81
VPS13A-206ENST00000376646 SUV39H1O43463 412 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 ATF2P15336 505 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 ATF4P18848 351 aaPredicted RBP3.72□□□□□ -1.81
VPS13A-206ENST00000376646 MAPKAPK2P49137 400 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 CASP7P55210 303 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 OLFML2BQ68BL8 750 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 PAQR3Q6TCH7 311 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 MARCH10Q8NA82 808 aaPredicted RBP3.72□□□□□ -1.81
VPS13A-206ENST00000376646 OR6P1Q8NGX9 317 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 FEZF2Q8TBJ5 459 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 BORCS6Q96GS4 357 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 SEC16BQ96JE7 1060 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 KCNC2Q96PR1 638 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 CLEC1BQ9P126 229 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 SIT1Q9Y3P8 196 aa3.72□□□□□ -1.81
VPS13A-206ENST00000376646 A0A1B0GTL3 188 aa3.71□□□□□ -1.82
VPS13A-206ENST00000376646 CYBBP04839 570 aa3.71□□□□□ -1.82
VPS13A-206ENST00000376646 ERCC5P28715 1186 aaPredicted RBP3.71□□□□□ -1.82
VPS13A-206ENST00000376646 CTSWP56202 376 aa3.71□□□□□ -1.82
VPS13A-206ENST00000376646 SCRN1Q12765 414 aa3.71□□□□□ -1.82
VPS13A-206ENST00000376646 EEF1DP3Q658K8 133 aa3.71□□□□□ -1.82
VPS13A-206ENST00000376646 LARP1BQ659C4 914 aaKnown RBP3.71□□□□□ -1.82
VPS13A-206ENST00000376646 C6orf15Q6UXA7 325 aaPredicted RBP3.71□□□□□ -1.82
VPS13A-206ENST00000376646 MICAL1Q8TDZ2 1067 aa3.71□□□□□ -1.82
VPS13A-206ENST00000376646 SYT3Q9BQG1 590 aa3.71□□□□□ -1.82
VPS13A-206ENST00000376646 PODXL2Q9NZ53 605 aa3.71□□□□□ -1.82
VPS13A-206ENST00000376646 DBR1Q9UK59 544 aaKnown RBP3.71□□□□□ -1.82
VPS13A-206ENST00000376646 ANKRD34BA5PLL1 514 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 OTOL1A6NHN0 477 aaPredicted RBP3.7□□□□□ -1.82
VPS13A-206ENST00000376646 PLA2G1BP04054 148 aaKnown RBP3.7□□□□□ -1.82
VPS13A-206ENST00000376646 GLI4P10075 376 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 PLS3P13797 630 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 FBLN1P23142 703 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 IGFBP6P24592 240 aaPredicted RBP3.7□□□□□ -1.82
VPS13A-206ENST00000376646 CYP4F3Q08477 520 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 NR1I3Q14994 352 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 RCC1LQ96I51 464 aaKnown RBP3.7□□□□□ -1.82
VPS13A-206ENST00000376646 CAPN10Q9HC96 672 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 BTG4Q9NY30 223 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 IRS2Q9Y4H2 1338 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 NPHP3-ACAD11A0A0J9YXS1 232 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 C7orf72A4D263 438 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 SRGAP3O43295 1099 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 ETFBP38117 255 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 TMEM62Q0P6H9 643 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 LZTR1Q8N653 840 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 TP53I13Q8NBR0 393 aaPredicted RBP3.7□□□□□ -1.82
VPS13A-206ENST00000376646 ADAM7Q9H2U9 754 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 EMC9Q9Y3B6 208 aa3.7□□□□□ -1.82
VPS13A-206ENST00000376646 FFAR3O14843 346 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 FUCA1P04066 466 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 THBDP07204 575 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 SF1Q15637 639 aaKnown RBP3.69□□□□□ -1.82
VPS13A-206ENST00000376646 INF2Q27J81 1249 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 GTF2IRD2BQ6EKJ0 949 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 GTF2IRD2Q86UP8 949 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 BVESQ8NE79 360 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 DPF3Q92784 378 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 MTA3Q9BTC8 594 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 XYLT2Q9H1B5 865 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 ARNTLO00327 626 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 NTRK1P04629 796 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 ASGR2P07307 311 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 PAMP19021 973 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 PMLP29590 882 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 GRB10Q13322 594 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 PRSS53Q2L4Q9 553 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 MRM1Q6IN84 353 aaKnown RBP3.69□□□□□ -1.82
VPS13A-206ENST00000376646 TEX2Q8IWB9 1127 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 NLGN2Q8NFZ4 835 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 USP33Q8TEY7 942 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 BTN2A2Q8WVV5 523 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms