RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GRK7Q8WTQ7 553 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 DHTKD1Q96HY7 919 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-203ENST00000372407 VCXQ9H320 206 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 PDE11AQ9HCR9 933 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 SOS2Q07890 1332 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-203ENST00000372407 MAP3K15Q6ZN16 1313 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 FOSP01100 380 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-203ENST00000372407 ALDH1B1P30837 517 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 ADCY8P40145 1251 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 GUCY2DQ02846 1103 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 SEPT6Q14141 434 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 PSMD6Q15008 389 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 EXOC3L4Q17RC7 722 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 C11orf57Q6ZUT1 292 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-203ENST00000372407 FBXO11Q86XK2 927 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 RNF10Q8N5U6 811 aaKnown RBP12.53□□□□□ -0.4
PTPRF-203ENST00000372407 IFNAR1P17181 557 aa12.52□□□□□ -0.4
PTPRF-203ENST00000372407 SIRT2Q8IXJ6 389 aa12.52□□□□□ -0.4
PTPRF-203ENST00000372407 RPUSD2Q8IZ73 545 aaKnown RBP12.52□□□□□ -0.4
PTPRF-203ENST00000372407 ENOX1Q8TC92 643 aaKnown RBP12.52□□□□□ -0.4
PTPRF-203ENST00000372407 ST7Q9NRC1 585 aa12.52□□□□□ -0.4
PTPRF-203ENST00000372407 C1orf112Q9NSG2 853 aa12.52□□□□□ -0.4
PTPRF-203ENST00000372407 DDX25Q9UHL0 483 aaKnown RBP12.52□□□□□ -0.4
PTPRF-203ENST00000372407 TACC3Q9Y6A5 838 aa12.52□□□□□ -0.4
PTPRF-203ENST00000372407 KIF13AQ9H1H9 1805 aa12.52□□□□□ -0.4
PTPRF-203ENST00000372407 HIP1RO75146 1068 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 ATP2B4P23634 1241 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 AOC3Q16853 763 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 GNPTABQ3T906 1256 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 PALM2Q8IXS6 379 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 PPM1KQ8N3J5 372 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 AK8Q96MA6 479 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 RILPQ96NA2 401 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.52□□□□□ -0.41
PTPRF-203ENST00000372407 NUF2Q9BZD4 464 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 GPHNQ9NQX3 736 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-203ENST00000372407 TYW1Q9NV66 732 aaKnown RBP12.52□□□□□ -0.41
PTPRF-203ENST00000372407 MRPL11Q9Y3B7 192 aaKnown RBP12.52□□□□□ -0.41
PTPRF-203ENST00000372407 DIP2AQ14689 1571 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 CCDC151A5D8V7 595 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 P4HA1P13674 534 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 RSAD2Q8WXG1 361 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 PFDN4Q9NQP4 134 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 DCCP43146 1447 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 PRPF6O94906 941 aaKnown RBP12.52□□□□□ -0.41
PTPRF-203ENST00000372407 GPR162Q16538 588 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 LRRC47Q8N1G4 583 aaKnown RBP12.52□□□□□ -0.41
PTPRF-203ENST00000372407 GJA10Q969M2 543 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 CPSF2Q9P2I0 782 aaKnown RBP12.52□□□□□ -0.41
PTPRF-203ENST00000372407 PCDHA1Q9Y5I3 950 aa12.52□□□□□ -0.41
PTPRF-203ENST00000372407 H0YCG3 227 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 FMNL1O95466 1100 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-203ENST00000372407 FKBP3Q00688 224 aaKnown RBP12.51□□□□□ -0.41
PTPRF-203ENST00000372407 CCDC170Q8IYT3 715 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 MIPOL1Q8TD10 442 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 GLG1Q92896 1179 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 CPS1P31327 1500 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 FRMPD2Q68DX3 1309 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-203ENST00000372407 PHBP35232 272 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 PTPROQ16827 1216 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 RUNDC3BQ96NL0 473 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 KRT12Q99456 494 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 RAB20Q9NX57 234 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 ECM2O94769 699 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-203ENST00000372407 SARNPP82979 210 aaKnown RBP12.51□□□□□ -0.41
PTPRF-203ENST00000372407 HADHQ16836 314 aaKnown RBP12.51□□□□□ -0.41
PTPRF-203ENST00000372407 LARP4BQ92615 738 aaKnown RBP12.51□□□□□ -0.41
PTPRF-203ENST00000372407 CCDC127Q96BQ5 260 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 BCAP29Q9UHQ4 241 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 NOD1Q9Y239 953 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 CRB1P82279 1406 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 PHLPP2Q6ZVD8 1323 aa12.51□□□□□ -0.41
PTPRF-203ENST00000372407 POLR2MP0CAP2 368 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 XKR9Q5GH70 373 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 GPATCH4Q5T3I0 446 aaKnown RBP12.5□□□□□ -0.41
PTPRF-203ENST00000372407 ARMCX5Q6P1M9 558 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 P2RX5Q93086 422 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 CCDC17Q96LX7 622 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 ATG3Q9NT62 314 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 USP31Q70CQ4 1352 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 TRPM1Q7Z4N2 1603 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 K7ENM7 598 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 THAP12O43422 761 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 CRKLP46109 303 aaKnown RBP12.5□□□□□ -0.41
PTPRF-203ENST00000372407 LIG3P49916 1009 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 RASSF7Q02833 373 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 GRM1Q13255 1194 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 NECTIN1Q15223 517 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 CERKLQ49MI3 558 aaPredicted RBP12.5□□□□□ -0.41
PTPRF-203ENST00000372407 PHLDB3Q6NSJ2 640 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 ADAT2Q7Z6V5 191 aaKnown RBP12.5□□□□□ -0.41
PTPRF-203ENST00000372407 FTOQ9C0B1 505 aaKnown RBP eCLIP12.5□□□□□ -0.41
PTPRF-203ENST00000372407 CPSF1Q10570 1443 aaKnown RBP12.5□□□□□ -0.41
PTPRF-203ENST00000372407 TESPA1A2RU30 521 aaPredicted RBP12.5□□□□□ -0.41
PTPRF-203ENST00000372407 ENC1O14682 589 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 CASQ2O14958 399 aaPredicted RBP12.5□□□□□ -0.41
PTPRF-203ENST00000372407 SEMA3EO15041 775 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 MYL1P05976 194 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 MAP2K2P36507 400 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 LIG4P49917 911 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms