RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 ZNF354CQ86Y25 554 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 NFU1Q9UMS0 254 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 KSR1Q8IVT5 923 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 PALM2Q8IXS6 379 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 SMC1BQ8NDV3 1235 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 ABHD10Q9NUJ1 306 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 BAG2O95816 211 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 ZSCAN20P17040 1043 aaPredicted RBP17.42■□□□□ 0.38
COL17A1-202ENST00000369733 MRPS25P82663 173 aaKnown RBP17.42■□□□□ 0.38
COL17A1-202ENST00000369733 RASGRP4Q8TDF6 673 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 LRRC8CQ8TDW0 803 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 KLHL29Q96CT2 875 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 PTPN22Q9Y2R2 807 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 SMIM24O75264 130 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 MYL1P05976 194 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 CYP2C19P33261 490 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 PLTPP55058 493 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 HIBCHQ6NVY1 386 aaPredicted RBP17.42■□□□□ 0.38
COL17A1-202ENST00000369733 CAPN12Q6ZSI9 719 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 LARP4BQ92615 738 aaKnown RBP17.42■□□□□ 0.38
COL17A1-202ENST00000369733 MAGOHBQ96A72 148 aaKnown RBP17.42■□□□□ 0.38
COL17A1-202ENST00000369733 DDX25Q9UHL0 483 aaKnown RBP17.42■□□□□ 0.38
COL17A1-202ENST00000369733 ARHGAP31Q2M1Z3 1444 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 TRIM37O94972 964 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 PDE8BO95263 885 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 CDC25AP30304 524 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 PHBP35232 272 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 GYG1P46976 350 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 CEP120Q8N960 986 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 AK8Q96MA6 479 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 RIC8AQ9NPQ8 531 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 ARHGAP42A6NI28 874 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 IFNB1P01574 187 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 PCP11498 1178 aaKnown RBP17.41■□□□□ 0.38
COL17A1-202ENST00000369733 STRN3Q13033 797 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 RASA3Q14644 834 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 OGFOD1Q8N543 542 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 PBKQ96KB5 322 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 TRIM4Q9C037 500 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 GREM2Q9H772 168 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 ERVV-2B6SEH9 535 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 OPHN1O60890 802 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 IL9RQ01113 521 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 TADA3O75528 432 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 CCNE1P24864 410 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 CCZ1BP86790 482 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 CCZ1P86791 482 aaPredicted RBP17.41■□□□□ 0.38
COL17A1-202ENST00000369733 TRPC3Q13507 836 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 ZKSCAN8Q15776 578 aaPredicted RBP17.41■□□□□ 0.38
COL17A1-202ENST00000369733 CD2APQ9Y5K6 639 aa17.41■□□□□ 0.38
COL17A1-202ENST00000369733 FRMPD2Q68DX3 1309 aaPredicted RBP17.41■□□□□ 0.38
COL17A1-202ENST00000369733 LMNB1P20700 586 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 MAP7Q14244 749 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 CTAGE3PQ8IX95 158 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 ZSWIM5Q9P217 1185 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 KIF1BO60333 1816 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 LRRC41Q15345 812 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 GSPT2Q8IYD1 628 aaKnown RBP17.4■□□□□ 0.38
COL17A1-202ENST00000369733 RPUSD2Q8IZ73 545 aaKnown RBP17.4■□□□□ 0.38
COL17A1-202ENST00000369733 SSX2IPQ9Y2D8 614 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 CTIFO43310 598 aaKnown RBP17.4■□□□□ 0.38
COL17A1-202ENST00000369733 PSMD6Q15008 389 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 PI16Q6UXB8 463 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 SMCR8Q8TEV9 937 aaPredicted RBP17.4■□□□□ 0.38
COL17A1-202ENST00000369733 PSTPIP2Q9H939 334 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 CCDC87Q9NVE4 849 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 MED14O60244 1454 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 PABPN1LA6NDY0 278 aaKnown RBP17.4■□□□□ 0.38
COL17A1-202ENST00000369733 RBBP5Q15291 538 aaKnown RBP17.4■□□□□ 0.38
COL17A1-202ENST00000369733 FAM133AQ8N9E0 248 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 ADGRG1Q9Y653 693 aa17.4■□□□□ 0.38
COL17A1-202ENST00000369733 CFAP61Q8NHU2 1237 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 RAB20Q9NX57 234 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 KAT6BQ8WYB5 2073 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 PRR16Q569H4 304 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 RASIP1Q5U651 963 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 BBOF1Q8ND07 529 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 E4F1Q66K89 784 aaPredicted RBP17.39■□□□□ 0.37
COL17A1-202ENST00000369733 RBM17Q96I25 401 aaKnown RBP17.39■□□□□ 0.37
COL17A1-202ENST00000369733 PLAAQ9Y263 795 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 PTPREP23469 700 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 SH3BGRP55822 239 aaPredicted RBP17.39■□□□□ 0.37
COL17A1-202ENST00000369733 SLFN12Q8IYM2 578 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 RSAD2Q8WXG1 361 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 WDR24Q96S15 920 aa17.39■□□□□ 0.37
COL17A1-202ENST00000369733 DDX23Q9BUQ8 820 aaKnown RBP17.39■□□□□ 0.37
COL17A1-202ENST00000369733 SERPING1P05155 500 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 LIFRP42702 1097 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.38■□□□□ 0.37
COL17A1-202ENST00000369733 SOS2Q07890 1332 aaPredicted RBP17.38■□□□□ 0.37
COL17A1-202ENST00000369733 ZBTB22O15209 634 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 NR2F2P24468 414 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 IRX4P78413 519 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 NUF2Q9BZD4 464 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 N4BP1O75113 896 aaKnown RBP17.38■□□□□ 0.37
COL17A1-202ENST00000369733 CFBP00751 764 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 MESDQ14696 234 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 GGA1Q9UJY5 639 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 SHROOM2Q13796 1616 aa17.38■□□□□ 0.37
COL17A1-202ENST00000369733 CFAP74Q9C0B2 1584 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms