RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 ERVV-2B6SEH9 535 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 SART1O43290 800 aaKnown RBP9.73□□□□□ -0.85
SYNE1-209ENST00000367257 MYCT1Q8N699 235 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 RNF34Q969K3 372 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 CCDC124Q96CT7 223 aaKnown RBP9.73□□□□□ -0.85
SYNE1-209ENST00000367257 SLF1Q9BQI6 1058 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 MRPL44Q9H9J2 332 aaKnown RBP9.73□□□□□ -0.85
SYNE1-209ENST00000367257 AS3MTQ9HBK9 375 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 EPS15L1Q9UBC2 864 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 SLIT1O75093 1534 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 ABCC12Q96J65 1359 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 TTC4O95801 387 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 PFKFB1P16118 471 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 PDE6CP51160 858 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 MFSD4BQ5TF39 518 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 ARHGEF18Q6ZSZ5 1173 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 TMC4Q7Z404 712 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 HAUS7Q99871 368 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 PPP1R9AQ9ULJ8 1098 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 PYCARDQ9ULZ3 195 aa9.73□□□□□ -0.85
SYNE1-209ENST00000367257 ARHGEF37A1IGU5 675 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 E7EWF7 191 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 ATF2P15336 505 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 TXKP42681 527 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 ZBTB8OSQ8IWT0 167 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 CCDC13Q8IYE1 715 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 BLIDQ8IZY5 108 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 SPATA5Q8NB90 893 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 C1orf112Q9NSG2 853 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 POLR3EQ9NVU0 708 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 ARHGAP23Q9P227 1491 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 MYOM2P54296 1465 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 CIAO1O76071 339 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 SEC31AO94979 1220 aaKnown RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 SRGAP2BP0DMP2 458 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 TTC19Q6DKK2 380 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 GRAMD4Q6IC98 578 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 RRAGAQ7L523 313 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 KLHL7Q8IXQ5 586 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 TRIM35Q9UPQ4 493 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 MRPL11Q9Y3B7 192 aaKnown RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 DAAM1Q9Y4D1 1078 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 XPOTO43592 962 aaKnown RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 ATP5HO75947 161 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 OR52Z1P0C646 297 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 UBE3CQ15386 1083 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 NAIF1Q69YI7 327 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 LRRC43Q8N309 656 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 MIGA1Q8NAN2 632 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 LRRC8CQ8TDW0 803 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 RIOK1Q9BRS2 568 aaKnown RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 LSM14BQ9BX40 385 aaKnown RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 TMEM63CQ9P1W3 806 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 ADAM21Q9UKJ8 722 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 AATKQ6ZMQ8 1374 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 SNUPNO95149 360 aaKnown RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 GCNT3O95395 438 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 TBC1D8O95759 1140 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 SLC1A4P43007 532 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 IFT88Q13099 833 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 RASA3Q14644 834 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 CWF19L2Q2TBE0 894 aaKnown RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 KRT39Q6A163 491 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 NCAPH2Q6IBW4 605 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 RILPQ96NA2 401 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 RMI1Q9H9A7 625 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 SLC52A2Q9HAB3 445 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 PPANQ9NQ55 473 aaKnown RBP9.72□□□□□ -0.85
SYNE1-209ENST00000367257 ETAA1Q9NY74 926 aa9.72□□□□□ -0.85
SYNE1-209ENST00000367257 TOPAZ1Q8N9V7 1692 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 ENO4A6NNW6 628 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 M0QZ92 97 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 STAM2O75886 525 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 TNNC2P02585 160 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 PCYT1AP49585 367 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 CRYMQ14894 314 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 CNBD1Q8NA66 436 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 PRPF38AQ8NAV1 312 aaKnown RBP9.71□□□□□ -0.85
SYNE1-209ENST00000367257 BAG5Q9UL15 447 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 IPO5O00410 1097 aaKnown RBP9.71□□□□□ -0.85
SYNE1-209ENST00000367257 GCP02774 474 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 RPS6KA2Q15349 733 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 PPP4R3CPQ6ZMV5 832 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 C2CD5Q86YS7 1000 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 TSPYL6Q8N831 410 aa9.71□□□□□ -0.85
SYNE1-209ENST00000367257 LRRC59Q96AG4 307 aaKnown RBP9.71□□□□□ -0.85
SYNE1-209ENST00000367257 MRPL40Q9NQ50 206 aaKnown RBP9.71□□□□□ -0.85
SYNE1-209ENST00000367257 G3BP2Q9UN86 482 aaKnown RBP9.71□□□□□ -0.85
SYNE1-209ENST00000367257 EPN1Q9Y6I3 576 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-209ENST00000367257 CHD2O14647 1828 aaKnown RBP9.71□□□□□ -0.86
SYNE1-209ENST00000367257 DYTNA2CJ06 578 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 NR1H3Q13133 447 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 ORC2Q13416 577 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-209ENST00000367257 TNFAIP1Q13829 316 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 PRPSAP1Q14558 356 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 NEK8Q86SG6 692 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 ZNF654Q8IZM8 581 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 NFATC2IPQ8NCF5 419 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.71□□□□□ -0.86
SYNE1-209ENST00000367257 MAP3K19Q56UN5 1328 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms