RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CTDP1Q9Y5B0 961 aaPredicted RBP21.18■□□□□ 0.98
CLN3-206ENST00000360019 A0A1B0GVL5 298 aa21.18■□□□□ 0.98
CLN3-206ENST00000360019 ALAS1P13196 640 aa21.18■□□□□ 0.98
CLN3-206ENST00000360019 CMA1P23946 247 aa21.18■□□□□ 0.98
CLN3-206ENST00000360019 TEX2Q8IWB9 1127 aa21.18■□□□□ 0.98
CLN3-206ENST00000360019 ENGASEQ8NFI3 743 aa21.18■□□□□ 0.98
CLN3-206ENST00000360019 TMEM60Q9H2L4 133 aa21.18■□□□□ 0.98
CLN3-206ENST00000360019 MYH7BA7E2Y1 1941 aa21.17■□□□□ 0.98
CLN3-206ENST00000360019 NFIBO00712 420 aa21.17■□□□□ 0.98
CLN3-206ENST00000360019 SNW1Q13573 536 aaKnown RBP21.17■□□□□ 0.98
CLN3-206ENST00000360019 TMEM132BQ14DG7 1078 aa21.17■□□□□ 0.98
CLN3-206ENST00000360019 ZSCAN23Q3MJ62 389 aa21.17■□□□□ 0.98
CLN3-206ENST00000360019 MUM1L1Q5H9M0 696 aa21.17■□□□□ 0.98
CLN3-206ENST00000360019 MCTP2Q6DN12 878 aa21.17■□□□□ 0.98
CLN3-206ENST00000360019 POTEEQ6S8J3 1075 aa21.17■□□□□ 0.98
CLN3-206ENST00000360019 AGTPBP1Q9UPW5 1226 aa21.17■□□□□ 0.98
CLN3-206ENST00000360019 SPDYE3A6NKU9 549 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 GCOM1H8Y6P7 765 aaPredicted RBP21.16■□□□□ 0.98
CLN3-206ENST00000360019 TDP2O95551 362 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 FOSP01100 380 aaPredicted RBP21.16■□□□□ 0.98
CLN3-206ENST00000360019 POLR2MP0CAP2 368 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 NDUFA8P51970 172 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 OAZ1P54368 228 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 SNAPC2Q13487 334 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 RESP18Q5W5W9 173 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 CCDC73Q6ZRK6 1079 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 CRYGNQ8WXF5 182 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 HOMER2Q9NSB8 354 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 RIPK3Q9Y572 518 aa21.16■□□□□ 0.98
CLN3-206ENST00000360019 FAM160A1Q05DH4 1040 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 ORC2Q13416 577 aaPredicted RBP21.15■□□□□ 0.98
CLN3-206ENST00000360019 IL17AQ16552 155 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 SPECC1Q5M775 1068 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 CCDC183Q5T5S1 534 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 FASTKD5Q7L8L6 764 aaKnown RBP21.15■□□□□ 0.98
CLN3-206ENST00000360019 ZNF579Q8NAF0 562 aaKnown RBP21.15■□□□□ 0.98
CLN3-206ENST00000360019 SYAP1Q96A49 352 aaPredicted RBP21.15■□□□□ 0.98
CLN3-206ENST00000360019 FERMT2Q96AC1 680 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 CSRNP2Q9H175 543 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 PNMA2Q9UL42 364 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 FAM237AA0A1B0GTK4 181 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 ATP2A1O14983 1001 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 NEMFO60524 1076 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 PFKFB1P16118 471 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 HSD17B4P51659 736 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 GHRHRQ02643 423 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 ARL6IP4Q66PJ3 421 aaKnown RBP21.15■□□□□ 0.98
CLN3-206ENST00000360019 GPAT2Q6NUI2 795 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 FCHSD1Q86WN1 690 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 FMR1NBQ8N0W7 255 aaPredicted RBP21.15■□□□□ 0.98
CLN3-206ENST00000360019 HPSEQ9Y251 543 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 A0A0G2JMZ2 1700 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 TRPM7Q96QT4 1865 aa21.15■□□□□ 0.98
CLN3-206ENST00000360019 SLC37A4O43826 429 aa21.14■□□□□ 0.97
CLN3-206ENST00000360019 SREBF1P36956 1147 aa21.14■□□□□ 0.97
CLN3-206ENST00000360019 SNRNP48Q6IEG0 339 aaKnown RBP21.14■□□□□ 0.97
CLN3-206ENST00000360019 PPP4R3AQ6IN85 833 aa21.14■□□□□ 0.97
CLN3-206ENST00000360019 POTEDQ86YR6 584 aa21.14■□□□□ 0.97
CLN3-206ENST00000360019 TRERF1Q96PN7 1200 aa21.14■□□□□ 0.97
CLN3-206ENST00000360019 ASCC2Q9H1I8 757 aaPredicted RBP21.14■□□□□ 0.97
CLN3-206ENST00000360019 GPBP1L1Q9HC44 474 aaPredicted RBP21.14■□□□□ 0.97
CLN3-206ENST00000360019 DDX19AQ9NUU7 478 aaKnown RBP21.14■□□□□ 0.97
CLN3-206ENST00000360019 VWA3AA6NCI4 1184 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 LAD1O00515 517 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 ARHGAP4P98171 946 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 LBX2Q6XYB7 198 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 MS4A4AQ96JQ5 239 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 TEX13BQ9BXU2 312 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 USP11P51784 963 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 IRX3P78415 501 aaPredicted RBP21.13■□□□□ 0.97
CLN3-206ENST00000360019 MKRN3Q13064 507 aaKnown RBP21.13■□□□□ 0.97
CLN3-206ENST00000360019 MCF2L2Q86YR7 1114 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 RNF146Q9NTX7 359 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 COL20A1Q9P218 1284 aa21.13■□□□□ 0.97
CLN3-206ENST00000360019 PEX10O60683 326 aa21.12■□□□□ 0.97
CLN3-206ENST00000360019 OR52Z1P0C646 297 aa21.12■□□□□ 0.97
CLN3-206ENST00000360019 USP49Q70CQ1 688 aa21.12■□□□□ 0.97
CLN3-206ENST00000360019 BTBD7Q9P203 1132 aa21.12■□□□□ 0.97
CLN3-206ENST00000360019 PASKQ96RG2 1323 aa21.12■□□□□ 0.97
CLN3-206ENST00000360019 KIF3CO14782 793 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 GCFC2P16383 781 aaKnown RBP21.11■□□□□ 0.97
CLN3-206ENST00000360019 PRPHP41219 470 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 HUNKP57058 714 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 HERVK_113P62684 666 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 MTMR9Q96QG7 549 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 NUP62CLQ9H1M0 184 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 CLSTN2Q9H4D0 955 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 DDX25Q9UHL0 483 aaKnown RBP21.11■□□□□ 0.97
CLN3-206ENST00000360019 RBBP6Q7Z6E9 1792 aaKnown RBP21.11■□□□□ 0.97
CLN3-206ENST00000360019 CYP3A7-CYP3A51PA0A087WV96 503 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 SYCE3A1L190 88 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 CYP3A7P24462 503 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 STAT3P40763 770 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 PLS1Q14651 629 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 CAMK4Q16566 473 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 SPRYD7Q5W111 196 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 DTHD1Q6ZMT9 781 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 MB21D1Q8N884 522 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 MBOAT7Q96N66 472 aa21.11■□□□□ 0.97
CLN3-206ENST00000360019 GTF2A2P52657 109 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms