RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PSDA5PKW4 1024 aaPredicted RBP17.06■□□□□ 0.32
PTPRF-201ENST00000359947 THAP12O43422 761 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 NLRP4Q96MN2 994 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 TPCN1Q9ULQ1 816 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 NPR1P16066 1061 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 SARNPP82979 210 aaKnown RBP17.06■□□□□ 0.32
PTPRF-201ENST00000359947 PHLDB2Q86SQ0 1253 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 GOLGA5Q8TBA6 731 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 PIGBQ92521 554 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 ZNF75DP51815 510 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 NFX1Q12986 1120 aaKnown RBP17.05■□□□□ 0.32
PTPRF-201ENST00000359947 SKIV2LQ15477 1246 aaKnown RBP17.05■□□□□ 0.32
PTPRF-201ENST00000359947 MCTP2Q6DN12 878 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 ZNF274Q96GC6 653 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-201ENST00000359947 CCDC17Q96LX7 622 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 MAD1L1Q9Y6D9 718 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 PTPREP23469 700 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 KCNA4P22459 653 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 HINFPQ9BQA5 517 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 CLIC2O15247 247 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 H7C0C1 242 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 RPN1P04843 607 aaKnown RBP17.05■□□□□ 0.32
PTPRF-201ENST00000359947 ATP5OP48047 213 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 TUBB4BP68371 445 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 DENND2CQ68D51 928 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 ANTXR1Q9H6X2 564 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 ANAPC5Q9UJX4 755 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 UBE2SQ16763 222 aa17.05■□□□□ 0.32
PTPRF-201ENST00000359947 ZNF215Q9UL58 517 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-201ENST00000359947 BUB1BO60566 1050 aaPredicted RBP17.04■□□□□ 0.32
PTPRF-201ENST00000359947 EIF2AK2P19525 551 aaKnown RBP17.04■□□□□ 0.32
PTPRF-201ENST00000359947 ASPRV1Q53RT3 343 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 TMTC4Q5T4D3 741 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 SYDE2Q5VT97 1194 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 RTKN2Q8IZC4 609 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 RNF181Q9P0P0 153 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 CLIC4Q9Y696 253 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 MYL7Q01449 175 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 LRRC41Q15345 812 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 RNF8O76064 485 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 PI4KBQ9UBF8 816 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 XPOTO43592 962 aaKnown RBP17.04■□□□□ 0.32
PTPRF-201ENST00000359947 AOC3Q16853 763 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 PDZD4Q76G19 769 aaPredicted RBP17.04■□□□□ 0.32
PTPRF-201ENST00000359947 KANSL2Q9H9L4 492 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 RIPOR2Q9Y4F9 1068 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 ADCY9O60503 1353 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 METP08581 1390 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 LLGL1Q15334 1064 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 GPATCH4Q5T3I0 446 aaKnown RBP17.04■□□□□ 0.32
PTPRF-201ENST00000359947 LCORLQ8N3X6 602 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 UBN1Q9NPG3 1134 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 AFF2P51816 1311 aa17.04■□□□□ 0.32
PTPRF-201ENST00000359947 WDR46O15213 610 aaKnown RBP17.04■□□□□ 0.32
PTPRF-201ENST00000359947 CCDC62Q6P9F0 684 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 MYLK4Q86YV6 388 aaPredicted RBP17.03■□□□□ 0.32
PTPRF-201ENST00000359947 UHMK1Q8TAS1 419 aaKnown RBP17.03■□□□□ 0.32
PTPRF-201ENST00000359947 LMCD1Q9NZU5 365 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 PTPN22Q9Y2R2 807 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 INSRP06213 1382 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 ELF1P32519 619 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 NAA35Q5VZE5 725 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 NLRP10Q86W26 655 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 PPP4R1Q8TF05 950 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 USP28Q96RU2 1077 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 SHANK2Q9UPX8 1470 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 WDR17Q8IZU2 1322 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 MCUR1Q96AQ8 359 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 HAUS1Q96CS2 278 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 DESI2Q9BSY9 194 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 N4BP1O75113 896 aaKnown RBP17.03■□□□□ 0.32
PTPRF-201ENST00000359947 PPFIA1Q13136 1202 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 SSH3Q8TE77 659 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 XPO4Q9C0E2 1151 aaKnown RBP17.03■□□□□ 0.32
PTPRF-201ENST00000359947 DNMT1P26358 1616 aaKnown RBP17.03■□□□□ 0.32
PTPRF-201ENST00000359947 KRIT1O00522 736 aa17.03■□□□□ 0.32
PTPRF-201ENST00000359947 GOLGA8SH3BPF8 625 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 NSFP46459 744 aaKnown RBP17.02■□□□□ 0.32
PTPRF-201ENST00000359947 AFAP1L1Q8TED9 768 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 TRIM56Q9BRZ2 755 aaKnown RBP17.02■□□□□ 0.32
PTPRF-201ENST00000359947 DBNLQ9UJU6 430 aaKnown RBP17.02■□□□□ 0.32
PTPRF-201ENST00000359947 UGGT1Q9NYU2 1555 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 SASH1O94885 1247 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 FOSP01100 380 aaPredicted RBP17.02■□□□□ 0.32
PTPRF-201ENST00000359947 FAM26FQ5R3K3 315 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 SCARA5Q6ZMJ2 495 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 RFX6Q8HWS3 928 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 MASTLQ96GX5 879 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 SAMD9Q5K651 1589 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 LRRN2O75325 713 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 MECOMQ03112 1051 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 SH2D4BQ5SQS7 431 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 PDXDC2PQ6P474 469 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 CCNYQ8ND76 341 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 NUCKS1Q9H1E3 243 aaKnown RBP17.02■□□□□ 0.32
PTPRF-201ENST00000359947 RIC8AQ9NPQ8 531 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 CPSF3Q9UKF6 684 aaKnown RBP17.02■□□□□ 0.32
PTPRF-201ENST00000359947 INPP5FQ9Y2H2 1132 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 PLXNC1O60486 1568 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 DDX41Q9UJV9 622 aaKnown RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms