RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 PDE4DQ08499 809 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 CCDC24Q8N4L8 307 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 TRIM31Q9BZY9 425 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 YIPF3Q9GZM5 350 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 TRIM49BA6NDI0 452 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 GTPBP6O43824 516 aaPredicted RBP11.05□□□□□ -0.64
RNF40-202ENST00000357890 NMT2O60551 498 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 KRT14P02533 472 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 VIMP08670 466 aaKnown RBP11.05□□□□□ -0.64
RNF40-202ENST00000357890 TSPY3P0CV98 308 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 TSPY8P0CW00 308 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 ZNF18P17022 549 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 GNAQP50148 359 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 MYO1EQ12965 1108 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 PRPF4BQ13523 1007 aaKnown RBP11.05□□□□□ -0.64
RNF40-202ENST00000357890 NBPF5PQ86XG9 351 aaPredicted RBP11.05□□□□□ -0.64
RNF40-202ENST00000357890 NOC4LQ9BVI4 516 aaKnown RBP11.05□□□□□ -0.64
RNF40-202ENST00000357890 HAUS4Q9H6D7 363 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 ABHD10Q9NUJ1 306 aa11.05□□□□□ -0.64
RNF40-202ENST00000357890 SSR1P43307 286 aaKnown RBP11.04□□□□□ -0.64
RNF40-202ENST00000357890 CACNA2D3Q8IZS8 1091 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 CHP1Q99653 195 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 BRIP1Q9BX63 1249 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 SMARCAL1Q9NZC9 954 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 FAM184BQ9ULE4 1060 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 NDUFA10O95299 355 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 PARP1P09874 1014 aaKnown RBP11.04□□□□□ -0.64
RNF40-202ENST00000357890 TYW1BQ6NUM6 668 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 SETDB2Q96T68 719 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 HAUS2Q9NVX0 235 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 ANKIB1Q9P2G1 1089 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 SEC63Q9UGP8 760 aaKnown RBP11.04□□□□□ -0.64
RNF40-202ENST00000357890 BUB1O43683 1085 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 GYPCP04921 128 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 NR1D1P20393 614 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 NAPAP54920 295 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 APBA1Q02410 837 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 INF2Q27J81 1249 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 TCP11X2Q5H9J9 407 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 CCDC170Q8IYT3 715 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 RRP36Q96EU6 259 aaKnown RBP11.04□□□□□ -0.64
RNF40-202ENST00000357890 CALR3Q96L12 384 aaKnown RBP11.04□□□□□ -0.64
RNF40-202ENST00000357890 ANKRD2Q9GZV1 360 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 USP21Q9UK80 565 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 BCL9O00512 1426 aa11.04□□□□□ -0.64
RNF40-202ENST00000357890 B4DLN1 442 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 H7C1D1 291 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 FANCGO15287 622 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 FAM114A1Q8IWE2 563 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 TEX11Q8IYF3 940 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 MSANTD4Q8NCY6 345 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 CALML4Q96GE6 196 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 ZNF287Q9HBT7 754 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 FAM207AQ9NSI2 230 aaPredicted RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 RPS8P62241 208 aaKnown RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 AMPD3Q01432 767 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 TFAP4Q01664 338 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 IFT20Q8IY31 132 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 ANKS4BQ8N8V4 417 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 NYXQ9GZU5 481 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 EPB41L5Q9HCM4 733 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 NFU1Q9UMS0 254 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 GCOM1H8Y6P7 765 aaPredicted RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 BAG3O95817 575 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 ABL1P00519 1130 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 KRT18P05783 430 aaKnown RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 MYZAPP0CAP1 466 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 PDHBP11177 359 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 TRAPPC10P48553 1259 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 PSEN1P49768 467 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 MDM2Q00987 491 aaPredicted RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 TBX2Q13207 712 aaPredicted RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 ERFEQ4G0M1 354 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 TMTC3Q6ZXV5 915 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 KSR1Q8IVT5 923 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 BLIDQ8IZY5 108 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 FAM167BQ9BTA0 163 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 ARPP21Q9UBL0 812 aaPredicted RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 RWDD2AQ9UIY3 292 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 ROBO1Q9Y6N7 1651 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 PARP4Q9UKK3 1724 aaKnown RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 CAMTA2O94983 1202 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 PRCPP42785 496 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 EARS2Q5JPH6 523 aaKnown RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 ZNF658Q5TYW1 1059 aaPredicted RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 CCDC50Q8IVM0 306 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 ARL8AQ96BM9 186 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 PPP1R12CQ9BZL4 782 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 BSDC1Q9NW68 430 aaPredicted RBP11.03□□□□□ -0.64
RNF40-202ENST00000357890 IRAK4Q9NWZ3 460 aa11.03□□□□□ -0.64
RNF40-202ENST00000357890 LAMB4A4D0S4 1761 aa11.02□□□□□ -0.64
RNF40-202ENST00000357890 TTC26A0AVF1 554 aa11.02□□□□□ -0.65
RNF40-202ENST00000357890 SMIM22K7EJ46 135 aa11.02□□□□□ -0.65
RNF40-202ENST00000357890 HSPA1LP34931 641 aa11.02□□□□□ -0.65
RNF40-202ENST00000357890 KRT71Q3SY84 523 aa11.02□□□□□ -0.65
RNF40-202ENST00000357890 TMEM139Q8IV31 216 aa11.02□□□□□ -0.65
RNF40-202ENST00000357890 PARP9Q8IXQ6 854 aa11.02□□□□□ -0.65
RNF40-202ENST00000357890 SMCR8Q8TEV9 937 aaPredicted RBP11.02□□□□□ -0.65
RNF40-202ENST00000357890 RPGRIP1Q96KN7 1286 aa11.02□□□□□ -0.65
RNF40-202ENST00000357890 PHF20Q9BVI0 1012 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms