RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 BLIDQ8IZY5 108 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 ZBTB38Q8NAP3 1195 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 MAGEB10Q96LZ2 347 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 ANLNQ9NQW6 1124 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 TNNC1P63316 161 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 ARHGAP4P98171 946 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 C2orf69Q8N8R5 385 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 SH3RF3Q8TEJ3 882 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 PYM1Q9BRP8 204 aaKnown RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 CALN1Q9BXU9 219 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 ZNF157P51786 506 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 SLC27A3Q5K4L6 730 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 TMEM87BQ96K49 555 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 ANGPTL3Q9Y5C1 460 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 CHGBP05060 677 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 HSPD1P10809 573 aaKnown RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 NME3Q13232 169 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 CCDC121Q6ZUS5 278 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 PNMA8AQ86V59 439 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 HEXIM2Q96MH2 286 aaKnown RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 NSRP1Q9H0G5 558 aaKnown RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 ARHGAP42A6NI28 874 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 SERPIND1P05546 499 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 BCRP11274 1271 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 DDIT3P35638 169 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 MTM1Q13496 603 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 TBC1D9BQ66K14 1250 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 TBCKQ8TEA7 893 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 KRT12Q99456 494 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 RAD18Q9NS91 495 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 HESX1Q9UBX0 185 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 GOLGA8MH3BSY2 632 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 NEMP1O14524 444 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 NDUFA8P51970 172 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 VAV2P52735 878 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 NEDD9Q14511 834 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 FAM83BQ5T0W9 1011 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 HACE1Q8IYU2 909 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 SMAD5Q99717 465 aaKnown RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 CSRNP2Q9H175 543 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 NRBP1Q9UHY1 535 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 TTC41PQ6P2S7 1318 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 KLHL40Q2TBA0 621 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 REXO1Q8N1G1 1221 aaKnown RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.05□□□□□ -1.123e-6■■■■□ 26.1
VPS13A-202ENST00000357409 ZSWIM5Q9P217 1185 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 TRIM68Q6AZZ1 485 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 GBP6Q6ZN66 633 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 AFF2P51816 1311 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 SOS2Q07890 1332 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 WHAMMQ8TF30 809 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 NOX5Q96PH1 765 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 NRBP2Q9NSY0 501 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 MRPL11Q9Y3B7 192 aaKnown RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 SMARCA4P51532 1647 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 PRXQ9BXM0 1461 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 YTHDC2Q9H6S0 1430 aaKnown RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 ANKRD36BQ8N2N9 1353 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 KITP10721 976 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 ACTN1P12814 892 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 SLCO1A2P46721 670 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 AGR3Q8TD06 166 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 PPP4R1Q8TF05 950 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 SECISBP2LQ93073 1101 aaKnown RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 SYNRGQ9UMZ2 1314 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 PDE6AP16499 860 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 PLCB4Q15147 1175 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 PAN2Q504Q3 1202 aaKnown RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 TRIM56Q9BRZ2 755 aaKnown RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 SIK2Q9H0K1 926 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 RCN2Q14257 317 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 PRR23CQ6ZRP0 262 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 MTERF4Q7Z6M4 381 aaKnown RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 RHPN2Q8IUC4 686 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 CCDC13Q8IYE1 715 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 HIPK4Q8NE63 616 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 SYMPKQ92797 1274 aaKnown RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 STAT1P42224 750 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 AFG1LQ8WV93 481 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 N4BP2L2Q92802 583 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-202ENST00000357409 SLC38A10Q9HBR0 1119 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 TRPC7Q9HCX4 862 aa8.05□□□□□ -1.12
VPS13A-202ENST00000357409 CREB3O43889 395 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 CYP27A1Q02318 531 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 KCNA1Q09470 495 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 ELF2Q15723 593 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 FANCLQ9NW38 375 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 BAIAP2L1Q9UHR4 511 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 HNRNPDLO14979 420 aaKnown RBP8.04□□□□□ -1.12
VPS13A-202ENST00000357409 ACBD5Q5T8D3 534 aaPredicted RBP8.04□□□□□ -1.12
VPS13A-202ENST00000357409 LMBRD2Q68DH5 695 aaPredicted RBP8.04□□□□□ -1.12
VPS13A-202ENST00000357409 LRRC4Q9HBW1 653 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 INTUQ9ULD6 942 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 SBNO1A3KN83 1393 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 ELP1O95163 1332 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 E2F8A0AVK6 867 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 GIGYF1O75420 1035 aaPredicted RBP8.04□□□□□ -1.12
VPS13A-202ENST00000357409 ZNF589Q86UQ0 364 aaPredicted RBP8.04□□□□□ -1.12
VPS13A-202ENST00000357409 ZNF710Q8N1W2 664 aa8.04□□□□□ -1.12
VPS13A-202ENST00000357409 SNX25Q9H3E2 840 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms