RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ST13P50502 369 aaKnown RBP13.68□□□□□ -0.22
COL6A3-203ENST00000353578 CDAN1Q8IWY9 1227 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 SLC38A10Q9HBR0 1119 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 POLR3EQ9NVU0 708 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 MYH6P13533 1939 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-203ENST00000353578 DCAF17Q5H9S7 520 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-203ENST00000353578 COL17A1Q9UMD9 1497 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-203ENST00000353578 SYNMO15061 1565 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 EIF3HO15372 352 aaKnown RBP eCLIP13.68□□□□□ -0.22
COL6A3-203ENST00000353578 SGSM2O43147 1006 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 KCTD16Q68DU8 428 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 RFWD2Q8NHY2 731 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 THAP11Q96EK4 314 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 CDC5LQ99459 802 aaKnown RBP13.67□□□□□ -0.22
COL6A3-203ENST00000353578 ZNF229Q9UJW7 825 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 EFCAB14O75071 495 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 ZSCAN20P17040 1043 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-203ENST00000353578 GUCY1A3Q02108 690 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 H0YCG3 227 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 GPT2Q8TD30 523 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 VPS16Q9H269 839 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 IFT122Q9HBG6 1241 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 ZFP69BQ9UJL9 534 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 CLASP1Q7Z460 1538 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 NLRP14Q86W24 1093 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 TRPA1O75762 1119 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 BPIFB4P59827 614 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 MED21Q13503 144 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 DNAL1Q4LDG9 190 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 ARHGAP22Q7Z5H3 698 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 VSTM4Q8IW00 320 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 EHD2Q9NZN4 543 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 RNF113AO15541 343 aaKnown RBP13.67□□□□□ -0.22
COL6A3-203ENST00000353578 CTIFO43310 598 aaKnown RBP13.67□□□□□ -0.22
COL6A3-203ENST00000353578 SLFN14P0C7P3 912 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 ANGPT1Q15389 498 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 CNGA2Q16280 664 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 C19orf60Q96EN9 201 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 DDX28Q9NUL7 540 aaKnown RBP13.67□□□□□ -0.22
COL6A3-203ENST00000353578 RAB20Q9NX57 234 aa13.67□□□□□ -0.22
COL6A3-203ENST00000353578 DCUN1D2Q6PH85 259 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 RAB44Q7Z6P3 723 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 ABCF2Q9UG63 623 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 NUP107P57740 925 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 TYW1BQ6NUM6 668 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 OSBPL5Q9H0X9 879 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 VWA3AA6NCI4 1184 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 E2F6O75461 281 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 RASSF9O75901 435 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 NT5C2P49902 561 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 PDHA1P08559 390 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 PSMC1P62191 440 aaKnown RBP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 CDK19Q9BWU1 502 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 PITPNM3Q9BZ71 974 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 PPIP5K1Q6PFW1 1433 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 TRAPPC8Q9Y2L5 1435 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 ATP6V1E1P36543 226 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 PDE4DQ08499 809 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 DDX42Q86XP3 938 aaKnown RBP eCLIP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 DDHD1Q8NEL9 900 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 THUMPD2Q9BTF0 503 aaKnown RBP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 BRD8Q9H0E9 1235 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 SLC12A5Q9H2X9 1139 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 INTUQ9ULD6 942 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 ECEL1O95672 775 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 KRT6AP02538 564 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 KRT6BP04259 564 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 P4HA1P13674 534 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 MSH2P43246 934 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 KRT6CP48668 564 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 IGBP1P78318 339 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 LRMPQ12912 555 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 KRT81Q14533 505 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 C1orf146Q5VVC0 180 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 LRIG3Q6UXM1 1119 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 HNRNPLLQ8WVV9 542 aaKnown RBP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 SGSM3Q96HU1 749 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 DHTKD1Q96HY7 919 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 QKIQ96PU8 341 aaKnown RBP eCLIP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 TRPC5Q9UL62 973 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 KCNA3P22001 575 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 MAP4P27816 1152 aaKnown RBP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 RINT1Q6NUQ1 792 aa13.66□□□□□ -0.22
COL6A3-203ENST00000353578 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-203ENST00000353578 RIPPLY1Q0D2K3 151 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 ANKLE2Q86XL3 938 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 COG1Q8WTW3 980 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 GOLGA8FQ08AF8 430 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 GOLGA8DPQ0D2H9 430 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 CEP85Q6P2H3 762 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 PKD2L2Q9NZM6 624 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 SAMD1Q6SPF0 538 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-203ENST00000353578 ZNF274Q96GC6 653 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-203ENST00000353578 PAPOLBQ9NRJ5 636 aaKnown RBP13.65□□□□□ -0.22
COL6A3-203ENST00000353578 STK17AQ9UEE5 414 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 ARIH1Q9Y4X5 557 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-203ENST00000353578 RAD23BP54727 409 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 RRAGAQ7L523 313 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 KRT25Q7Z3Z0 450 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms